Locus 1611

Sequence ID X_DroMel_CAF1
Location 4,611,435 – 4,611,535
Length 100
Max. P 0.998429
window2636

overview

Window 6

Location 4,611,435 – 4,611,535
Length 100
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 62.06
Mean single sequence MFE -19.17
Consensus MFE -13.95
Energy contribution -12.30
Covariance contribution -1.65
Combinations/Pair 1.44
Mean z-score -1.43
Structure conservation index 0.73
SVM decision value 3.10
SVM RNA-class probability 0.998429
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4611435 100 - 22224390
AAA-----UACCACUUAUAAA---------------UGCAAAAAAACUACACAAACCUGUGAUCUCAGUCGCCAUAACUUGGUCAAAUGAACUCCGAUUCCAGAGAGGCAUACCUUAAAA
...-----............(---------------(((..........((((....)))).((((((((((((.....)))((....))....)))))...)))).))))......... ( -14.60)
>DroSec_CAF1 35538 86 - 1
-------------------AA---------------CGCAGAAAAACUACACAUACCUAAGAUCCCAGAUGCCAUAACUUGGCCAAAUGGAUUCCGAUUCUAGAGUGGCGUACCUUAAAA
-------------------.(---------------(((((.....)).....((((((..((((((...((((.....))))....))).....)))..))).)))))))......... ( -17.50)
>DroEre_CAF1 38391 120 - 1
AAAGGAAAUGAAAUUUAUAACUUUUCGUUCGGACCAUUUACAAUGACCACUUAAGCCUGAAAUCCCAGACGCCAUAACUUGGCCAAAUGGAUUCCGAUUUUGGAGUGGCAUACCGCAAAA
...((.(((((((.........))))))).............(((.((((((.....((.(((((.....((((.....)))).....))))).))......))))))))).))...... ( -25.40)
>consensus
AAA_____U___A_UUAUAAA_______________UGCAAAAAAACUACACAAACCUGAGAUCCCAGACGCCAUAACUUGGCCAAAUGGAUUCCGAUUCUAGAGUGGCAUACCUUAAAA
........................................................(((.(((((((...((((.....))))....))).....)))).))).((((....)))).... (-13.95 = -12.30 +  -1.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:37 2006