Locus 1591

Sequence ID X_DroMel_CAF1
Location 4,574,828 – 4,574,948
Length 120
Max. P 0.591108
window2608

overview

Window 8

Location 4,574,828 – 4,574,948
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.17
Mean single sequence MFE -16.08
Consensus MFE -14.86
Energy contribution -15.90
Covariance contribution 1.04
Combinations/Pair 1.03
Mean z-score -1.11
Structure conservation index 0.92
SVM decision value 0.12
SVM RNA-class probability 0.591108
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4574828 120 - 22224390
CCUAUUCAUCUUCAUAGCAACAUAUUUCAUUUACCACUUACCGCACAUUUAAUAAAGAGUUCGUUCUGAGCUUGUUAUUUUAAAAGUGCUCUCAAUUUCUUAACAACAAAUGCGAUUGCU
...............(((((......................((((.(((((....((((((.....))))))......))))).))))((.((................)).))))))) ( -15.29)
>DroSec_CAF1 4487 120 - 1
UCUAUUCAUUUUCAUAGCUACGUAUUUCAUUUCCCACUUACCGCACAUUUAAUAAAGAGUUCUUUCUCAGCUUGUUAUUUCAAAAGUGCUCUCAAUUUCUUAACAACAAAUGCGAUUGCU
...............(((..(((((((...............((((.((((((((.(((((.......))))).)))))..))).))))......((....))....)))))))...))) ( -13.40)
>DroSim_CAF1 5158 120 - 1
UCUAUUCAUUUUCAUAGCUACGUAUUUCAUUUCCCACUUACCGCACAUUUAAUAAAGAGUUCUUUCUCAGCUUGUUAUUUCAAAAGUGCUCUCAAUUUCUUAACAACAAAUGCGAUUGCU
...............(((..(((((((...............((((.((((((((.(((((.......))))).)))))..))).))))......((....))....)))))))...))) ( -13.40)
>DroEre_CAF1 4420 120 - 1
CCUAUUCAUUUUUAUAGCAACGUAUUUCAUUUCCCACUUACCGCACAUUUAAUAAAGAGUUCGUUCUGAGCUUGUUAUUUCAAAAGUGCUCUCAAUUUCUUAACAACAAAUGCGAUUGCU
...............((((((((((((...............((((.((((((((.((((((.....)))))).)))))..))).))))......((....))....))))))).))))) ( -20.10)
>DroYak_CAF1 4570 114 - 1
------CAUUUUUAUAGCAACGUAUUGCAUUUCCCACUUACCGCACAUUUAAUAAAGAGUUUUUUCUAAGCUUGUUAUUGCAAAAGUGCUCUCAAUUUCUUAACAACAAAUGCGAUUGCU
------.........((((((((((((.......).......((((.((((((((.((((((.....)))))).))))))..)).))))...................)))))).))))) ( -18.20)
>consensus
CCUAUUCAUUUUCAUAGCAACGUAUUUCAUUUCCCACUUACCGCACAUUUAAUAAAGAGUUCUUUCUCAGCUUGUUAUUUCAAAAGUGCUCUCAAUUUCUUAACAACAAAUGCGAUUGCU
...............((((((((((((...............((((.((((((((.((((((.....)))))).)))))..))).))))......((....))....))))))).))))) (-14.86 = -15.90 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:11 2006