Locus 1575

Sequence ID X_DroMel_CAF1
Location 4,494,422 – 4,494,542
Length 120
Max. P 0.500000
window2585

overview

Window 5

Location 4,494,422 – 4,494,542
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.28
Mean single sequence MFE -38.93
Consensus MFE -18.96
Energy contribution -20.27
Covariance contribution 1.31
Combinations/Pair 1.27
Mean z-score -1.77
Structure conservation index 0.49
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4494422 120 - 22224390
GUAACCAAGUAUCUCGGACAAGCUGACUUUCCCAAGGAAAGUGAGGUGUCUAACUAUAGGGUGAAAAUCAAUAAUGCGGUGCGCGAUACCUUGCGUAGCUGCCCGAGAUCUUUGUUCAUC
(.(((.(((.(((((((...((((((((((((...)))))))((((((((.........(((....)))......(((...)))))))))))...)))))..)))))))))).))))... ( -41.60)
>DroSec_CAF1 12603 120 - 1
GUCACCAAGUAUCUCGGACAAGCGGACUUUCCCAACGAGAGUCAGGUGGGUAGCUAUAAGGCGAAAAUCAAUUUGGAGGUGCGACAGACCUUGCGCAGCUGUCCGAGAUCUUUGUUCAUC
.....((((.((((((((((.((.(((((((.....))))))).(((.....(((....)))....))).........((((((......)))))).)))))))))))).))))...... ( -40.10)
>DroSim_CAF1 11381 120 - 1
GUCACCAAGUAUCUCGGACAGGCGGACUUUCCCAACGAGAGUCAGGUGGAUAGCUAUAAGGCGAAAAUCAGUUUGGAGGUGCGACAGACCUUGCGCAGCUGUCCGAGAUCUUUGUUCAUC
.....((((.(((((((((((((((((((((.....))))))).(((.....(((....)))....)))......(((((.(....)))))).)))..))))))))))).))))...... ( -41.30)
>DroEre_CAF1 18770 120 - 1
GUAACCAAGUAUCUCGGACAGGCGGACUUUCCCAAUCAAAGUAUGGUGGACGCCUAUAAAAAUAGAAUCAAUAUUGAGGUGCGCAACAGCUUGCGCCGCUGCCCGAGAUCCUUGUUCAUC
.....((((.(((((((...(((((......(((.(((.....)))))).(((((.....((((.......)))).)))))(((((....))))))))))..))))))).))))...... ( -36.40)
>DroYak_CAF1 17711 120 - 1
GUGACCAAGUAUCUGGGACAGGCGGACUUUCCCAACGCGGAUCAAUUGGGCUUCUACAAGAUGAGAAUCAAUUUGGAGGUGCGCAACAGCUUGCGUAGCUGCCCGAGAUCUUUGUUCAUC
((((.(((((...(((((.((.....)).)))))..))(((((..((((((.....((((.((.....)).)))).((.(((((((....))))))).)))))))))))))))).)))). ( -39.10)
>DroAna_CAF1 23761 120 - 1
GUAUCCAAGUACCUCGGCCAGGCCGACUUCCCAAUGGCCAGUCACGUUGAUGUGUACAAGGCACGUCUUAAUUAUGAGGUGCGGAAAAAAUUGCAAAAUUGCCCACGUUCCCUAUUCAUC
........((((((((((((((........))..))))).........(((((((.....)))))))........)))))))((((......(((....))).....))))......... ( -35.10)
>consensus
GUAACCAAGUAUCUCGGACAGGCGGACUUUCCCAACGAGAGUCAGGUGGAUAGCUAUAAGGCGAAAAUCAAUUUGGAGGUGCGCAACACCUUGCGCAGCUGCCCGAGAUCUUUGUUCAUC
.....((((.(((((((...(((.(((((((.....)))))))...................................(((((........))))).)))..))))))).))))...... (-18.96 = -20.27 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:50 2006