Locus 1571

Sequence ID X_DroMel_CAF1
Location 4,482,603 – 4,482,699
Length 96
Max. P 0.755792
window2580

overview

Window 0

Location 4,482,603 – 4,482,699
Length 96
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 79.05
Mean single sequence MFE -44.83
Consensus MFE -24.33
Energy contribution -25.38
Covariance contribution 1.06
Combinations/Pair 1.19
Mean z-score -2.06
Structure conservation index 0.54
SVM decision value 0.49
SVM RNA-class probability 0.755792
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4482603 96 - 22224390
GCUGAUGGCGCCCAGCGAUCGUUUGGGCGCCGGA------------------ACGGGCGAAAAGACCAGCUUCUCGGCCAGCAGCUUGCUAGGCGUUAGCUGCGUAAGGGACAU
.....(((((((((((....).))))))))))..------------------((((.(((.(((.....))).))).)).((((((.((.....)).))))))))......... ( -39.80)
>DroVir_CAF1 3081 99 - 1
GCUGAUGGCACCCAGCGACUGUUUAGCCGGCGGU---------------AGCACGGGCGAGAAGACCAGCUUUUCGGCAAGCAGCUUGCUGGGCGUCAGCUGCGCCAGCGACAU
(((((((...((((((((((((((..(((((...---------------.)).))).(((((((.....)))))))..)))))).)))))))))))))))(((....))).... ( -45.60)
>DroPse_CAF1 5234 96 - 1
GCUAAUGGCGCCCAGCGAGCGCUUUGGCCCCGGC------------------ACUGGCGAAAAGACAAGCUUCUCCGCGAGCAGCUUGCUGGGCGUUAAUUGGGCCAGGGACAU
(((..((((((((((((((((((...((....))------------------...)))..........((((......)))).)))))))))))))))....)))......... ( -43.20)
>DroSec_CAF1 894 96 - 1
GCUGAUGGCGCCCAGAGAUCGCUUGGGCGCCGGA------------------ACGGGCGAAAAGACCAGCUUCUCGGCCAGCAGAUUGCUAGGCGUCAGCUGCGUCAGCGACAU
(((((((((((((((.......)))))))))...------------------..((.(((.(((.....))).))).)).((((..(((...)))....))))))))))..... ( -42.60)
>DroYak_CAF1 5497 114 - 1
GCUGAUGGCGCCCAGCGAUCUCUUGGGCGCCGCAACGCCAACGGGAACGGGCACGGGUGAAAAGACCAGCUUCUCGGCCAGCAACUUGCUGGGCGUCAGCUGCGUCAGUGACAU
(((((((((((((((.(....))))))))))((...(((..((....)))))...(((......)))((((...((.(((((.....))))).))..))))))))))))..... ( -53.50)
>DroAna_CAF1 9882 96 - 1
GCUGAUGGCGCCCAGGGAUCUCUUGGGAGCCGGA------------------ACCGGCGAGAAGACCAACUUCUCGGCCAGCAGCUUGCUGGGAGUCAGCUGGGAGAGCGACAU
(((..((((.((((((.....)))))).))))..------------------.(((((((((((.....))))))..(((((.....)))))......)))))...)))..... ( -44.30)
>consensus
GCUGAUGGCGCCCAGCGAUCGCUUGGGCGCCGGA__________________ACGGGCGAAAAGACCAGCUUCUCGGCCAGCAGCUUGCUGGGCGUCAGCUGCGUCAGCGACAU
(((((((((((((((.......))))))))).......................((.(((.(((.....))).))).))(((.....)))....)))))).............. (-24.33 = -25.38 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:46 2006