| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 554,587 – 554,693 |
| Length | 106 |
| Max. P | 0.600560 |
| Location | 554,587 – 554,693 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 88.96 |
| Mean single sequence MFE | -25.82 |
| Consensus MFE | -19.80 |
| Energy contribution | -19.91 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.600560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 554587 106 + 22224390 AGUUCGAACAUUCUUGGGGAAAAUAAGUAUUUUCCCG-----AAAAUUGGAAGCUUUCAAUAUUGC-AAAUACUGGAAACAGUAACUUGUAAGGUCGCCAAACUAAAAAGAG ...........((((.((((((((....)))))))).-----....((((..(((.......((((-((.(((((....)))))..)))))))))..))))......)))). ( -28.01) >DroSec_CAF1 19207 111 + 1 AGUUCGAACAUUCUUGGGUGAAAUAAGUAUUUUCCCACUUCCGCAAUUGGUAGCUUCCAAUAUUGCCAAAUACUGGA-ACAGUAACUUGUAAUGUCGCCAAAGAAAAAAGAG ..........(((((.(((((.(((((((((((((.......((((((((......)))..)))))........)))-).))).))))))....))))).)))))....... ( -24.36) >DroSim_CAF1 17691 111 + 1 ACUUCGAACAUUCUUGGGUGAAAUAAGUAUUUUCCCACUUUCGCAAUUGGUAGCUUCCAAUAUUGCCAAAUACUGGA-ACAGUAACUUGUAAUGUCGCCAAAGAAAAAAGAG ..........(((((.(((((.(((((((((((((...(((.((((((((......)))..))))).)))....)))-).))).))))))....))))).)))))....... ( -25.10) >consensus AGUUCGAACAUUCUUGGGUGAAAUAAGUAUUUUCCCACUU_CGCAAUUGGUAGCUUCCAAUAUUGCCAAAUACUGGA_ACAGUAACUUGUAAUGUCGCCAAAGAAAAAAGAG ...........(((((((.(((((....))))))))..........((((..((.......(((((....(((((....)))))....)))))))..))))......)))). (-19.80 = -19.91 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:28 2006