Locus 1556

Sequence ID X_DroMel_CAF1
Location 4,465,717 – 4,465,822
Length 105
Max. P 0.926931
window2558

overview

Window 8

Location 4,465,717 – 4,465,822
Length 105
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.04
Mean single sequence MFE -44.55
Consensus MFE -25.59
Energy contribution -28.15
Covariance contribution 2.56
Combinations/Pair 1.14
Mean z-score -2.60
Structure conservation index 0.57
SVM decision value 1.18
SVM RNA-class probability 0.926931
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4465717 105 - 22224390
------------UAGCACCAAUACCACUGGUCGCAGUAGUGUUCGUAGCGCUGCUA---CUGUUACCCAGAUAGCCACUGUGGCCAGUGGUGCUGCUGGCGUCCACGAAUCCCGAUUCCG
------------..((..((.(((((((((((((((((((((.....)))))((((---(((.....))).)))).)))))))))))))))).))...))......((((....)))).. ( -43.60)
>DroSec_CAF1 67356 105 - 1
------------CAGCACCAAUGCCACUGGUGGCAGUAGUGUUCGUUGCGCUGCUA---CUGUUACCCAGAUAGCCACUGUGGCCAGUGGUGCUGCUGGCGUCCACGAAUCCCGAUUCCG
------------((((((((..(((((.((((((((((((((.....)))))))).---(((.....)))...)))))))))))...))))))))..((.(((..........))).)). ( -47.90)
>DroEre_CAF1 71098 117 - 1
CAGCGCCAGCGCCAGCACCAAUACCACUGCUGGCAGUUGUGUUGGCAGUGCUGCUG---CUGUUACCCAAAUAGCCACUGUGGCCAGUGGUGCUGCUGGCGUCCACGAAUCCCGACUCCG
..(((((((((((((((.((....((((((..(((....)))..)))))).)).))---)))...........(((((((....))))))))).)))))))).................. ( -49.70)
>DroYak_CAF1 68250 95 - 1
-------------------------AGUGGUGGCAGUGGUGUUGGUUGUGCUGCUGCUACUGUUACCCAAAUAGCCACUGUGGCCAGUGGUGCUGCUGGCGUCCACGAAUCCCGAUUCCG
-------------------------..((((.((((((((.((((..((((....)).))......))))...)))))))).))))(((((((.....))).))))((((....)))).. ( -37.00)
>consensus
____________CAGCACCAAUACCACUGGUGGCAGUAGUGUUCGUAGCGCUGCUA___CUGUUACCCAAAUAGCCACUGUGGCCAGUGGUGCUGCUGGCGUCCACGAAUCCCGAUUCCG
............((((((((...((((.((((((((((((((.....)))))))).....((((.....))))))))))))))....))))))))..((.(((..........))).)). (-25.59 = -28.15 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:25 2006