Locus 1545

Sequence ID X_DroMel_CAF1
Location 4,454,458 – 4,454,578
Length 120
Max. P 0.800441
window2530

overview

Window 0

Location 4,454,458 – 4,454,578
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.75
Mean single sequence MFE -32.16
Consensus MFE -28.24
Energy contribution -28.88
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.47
Structure conservation index 0.88
SVM decision value 0.62
SVM RNA-class probability 0.800441
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4454458 120 + 22224390
GUGAAAAUAGGCCCCGCGAUAAGGGAGUGUGAGGUGUGCAAAUACUUUGCGUAGUCGAAGCACCGAACCACCUCCCACAUUCCCUCGCCCCAAAAACACACCUUUUGCACCACCUACGCA
(((....((((....((((...((((((((((((((.((((.....))))....(((......)))..))))))..))))))))))))..(((((.......))))).....))))))). ( -34.80)
>DroSec_CAF1 55880 120 + 1
GUGAAAAUAGGCCCCGCGAUAAGGGAGUGUGAGGUGUGCAAAUACUUUGCGUAGUCGAAGCACCGAACCACCUCCCACAUUCCCUCGCCCCAAAAACACACCUUUUGCACCACCUACGCA
(((....((((....((((...((((((((((((((.((((.....))))....(((......)))..))))))..))))))))))))..(((((.......))))).....))))))). ( -34.80)
>DroSim_CAF1 57212 120 + 1
GUGAAAAUAGGCCCCGCGAUAAGGGAGUGUGAGGUGUGCAAAUACUUUGCGUAGACGAAGCACCGAACCACCUCCCACAUUCCCUCGCCCCAAAAACACACCUUUUGCACCACCUACGCA
(((....((((....((((...((((((((((((((.((((.....)))).....((......))...))))))..))))))))))))..(((((.......))))).....))))))). ( -33.50)
>DroEre_CAF1 57804 119 + 1
GUGAAAAUAGGCCCCACGAUAAGGGAGUGUGAGGUGUGCAAAUACUUUGCGUAGUCGAAGCACCGAACCACCUCCCACAUUCCCUCGCCCG-AAAAUACACCUUUUGCACCACCUACGCA
(((....((((..........(((((((((((((((.((((.....))))....(((......)))..))))))..)))))))))....((-(((.......))))).....))))))). ( -30.90)
>DroYak_CAF1 56521 119 + 1
GUGAAAAUAGGCCCCACGAUAAGGAAGUGUGAGGUGUGCAAAUACUUUGCGUAGUCGAGGCACCGAACCACCUCCCACAUUCCCUCGCCCU-CAAACACACCUUUUGCACCACCUACGCA
(((....((((.....(((...(((((((.((((((.((((.....))))....(((......)))..)))))).))).)))).)))....-((((.......)))).....))))))). ( -26.80)
>consensus
GUGAAAAUAGGCCCCGCGAUAAGGGAGUGUGAGGUGUGCAAAUACUUUGCGUAGUCGAAGCACCGAACCACCUCCCACAUUCCCUCGCCCCAAAAACACACCUUUUGCACCACCUACGCA
(((......((....((((...((((((((((((((.((((.....))))....(((......)))..))))))..))))))))))))))......)))......(((.........))) (-28.24 = -28.88 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:01 2006