Locus 1526

Sequence ID X_DroMel_CAF1
Location 4,440,222 – 4,440,342
Length 120
Max. P 0.632158
window2477

overview

Window 7

Location 4,440,222 – 4,440,342
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.33
Mean single sequence MFE -34.16
Consensus MFE -31.46
Energy contribution -31.62
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.15
Structure conservation index 0.92
SVM decision value 0.20
SVM RNA-class probability 0.632158
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4440222 120 - 22224390
ACUCCAUCACAAACCCAAAACGAACAGCCAGACGACAAUGGUGGCUUUGAUCUUGGAGGGACUGCGACUGCGGUAAUGCGGAUGCAUCCCCAAGGCAAAGUUCAUGCACGGGAAACAUUU
.............(((..........((((........))))(((((((.((((((.(((..((((.(((((....))))).)))))))))))))))))))).......)))........ ( -36.80)
>DroSec_CAF1 41908 120 - 1
ACUCCAUCACAAACCCAAAACCAACAGCCAGACGACAAUGGUGGCUUUGAUCUUGGAGGGACUGCGACUGCGGUAGUGCGGAUGCAUCCCCAAGGCAAAGUUCAUGCACGGGAAAUAUUU
.............(((..........((((........))))(((((((.((((((.(((..((((.(((((....))))).)))))))))))))))))))).......)))........ ( -36.20)
>DroSim_CAF1 43360 120 - 1
ACUCCAUCACAAACCCAAAACCAACAGCCAGACGACAAUGGUGGCUUUGAUCUUGGAGGGACUGCGACUGCGGUAAUGCGGAUGCAUCCCCAAGGCAAAGUUCAUGCACGGAAAAUAUUU
..(((.....................((((........))))(((((((.((((((.(((..((((.(((((....))))).)))))))))))))))))))).......)))........ ( -34.70)
>DroEre_CAF1 43744 120 - 1
ACUCCAUCACAAACCCGAAACCAACGGCCAGACGACAAUGGUGGCUUUGAUCUUGGAGGGAUUGCGACUGCGGUGAUGCGGAUGCAUCCCCAAGGCAAAGUUCAUACACAGAAAACAUUU
................(((.....(.((((........)))).)(((((.((((((.(((..((((.(((((....))))).)))))))))))))))))))))................. ( -31.80)
>DroYak_CAF1 42610 120 - 1
ACUCCAUCACAAACCCGAAACCAACAGCCAGACGACAAUGGUGGCUUUGAUCUUGGACGGACUGCGACUGCGGUAAUGCGGAUGCAUCCCCAAGGCAAAGUUCAUGCACAGAAAACGUUU
......................(((.((((........))))(((((((.((((((..(((.((((.(((((....))))).))))))))))))))))))))..............))). ( -31.30)
>consensus
ACUCCAUCACAAACCCAAAACCAACAGCCAGACGACAAUGGUGGCUUUGAUCUUGGAGGGACUGCGACUGCGGUAAUGCGGAUGCAUCCCCAAGGCAAAGUUCAUGCACGGAAAACAUUU
..(((.....................((((........))))(((((((.((((((..(((.((((.(((((....))))).)))))))))))))))))))).......)))........ (-31.46 = -31.62 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:12:12 2006