Locus 1514

Sequence ID X_DroMel_CAF1
Location 4,432,762 – 4,432,876
Length 114
Max. P 0.619081
window2451

overview

Window 1

Location 4,432,762 – 4,432,876
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.49
Mean single sequence MFE -25.00
Consensus MFE -21.12
Energy contribution -21.76
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.32
Structure conservation index 0.84
SVM decision value 0.17
SVM RNA-class probability 0.619081
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4432762 114 + 22224390
UCGAUCUAUAGCCCCAAAGAUAACCAACCAA----CCGACCGACCCACUGAUACGUUCGGGGGUUUGUUGUCAUUCCUCCCAUUUUCCACUUUGGGCUGCAGUACUACUCACAGUAC--A
........((((((.((((.(....).....----.((((.(((((.((((.....))))))))).))))...................))))))))))..(((((......)))))--. ( -28.20)
>DroSec_CAF1 35113 120 + 1
UCGAUCUAUAGCCCCAAAGAUAACCAACCAACCAACCGACCGACCCACUGAUACGUCCGGGCGUUUGUUGUCAUUCCUCCCAUUUUCCACUUUGGGCUGCAGUACUACUCACAGUACACA
........((((((.((((.....((((.(((...(((..((...........))..)))..))).))))...................))))))))))..(((((......)))))... ( -22.35)
>DroSim_CAF1 36471 120 + 1
UCGAUCUAUAGCCCCAAAGAUAACCAACCAACCGACCGACCGACCCACUGAUACGUCCGGGCGUUUGUUGUCAUUCCUCCCAUUUUCCACUUUGGGCUGCAGUACUACUCACAGUACACA
........((((((.(((((((((.(((...(((..((..((......))...))..)))..))).))))))..................)))))))))..(((((......)))))... ( -23.06)
>DroEre_CAF1 36062 109 + 1
UCGAUCUAUAGCCCCAAAGAUAACCAACCGA--------CCGACCCACUGAUACGUCCGG-GGUUUGUUGUCAUUCCUCCCAUUUUCCACUUUGGGCUGCAGUACUACUCACAGUAC--A
........((((((.((((........(((.--------.((...........))..)))-((..((....))..))............))))))))))..(((((......)))))--. ( -24.10)
>DroYak_CAF1 35256 114 + 1
UCGAUCUAUAGCCCCAAAGAUAACCAACCGA----CCGACCGACCCACUGAUACGUCCGGGGGUUUGUUGUCAUUCCUCCCAUUUUCCACUUUGGGCUGCAGUACUACUCACUGUAC--A
........((((((.((((.....(....).----.((((.(((((.(((.......)))))))).))))...................))))))))))..((((........))))--. ( -27.30)
>consensus
UCGAUCUAUAGCCCCAAAGAUAACCAACCAA____CCGACCGACCCACUGAUACGUCCGGGGGUUUGUUGUCAUUCCUCCCAUUUUCCACUUUGGGCUGCAGUACUACUCACAGUAC__A
........((((((.((((......................(((..........))).(((((..((....))..))))).........))))))))))..(((((......)))))... (-21.12 = -21.76 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:11:48 2006