Locus 1468

Sequence ID X_DroMel_CAF1
Location 4,406,072 – 4,406,182
Length 110
Max. P 0.816222
window2341

overview

Window 1

Location 4,406,072 – 4,406,182
Length 110
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 93.12
Mean single sequence MFE -28.20
Consensus MFE -28.20
Energy contribution -28.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 1.00
SVM decision value 0.66
SVM RNA-class probability 0.816222
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4406072 110 - 22224390
---UAUGUAAAAGCACAGCUGCCUGGCUGCUGCUGCUGGACACGGAAAUAUCGAUCCAAAGUAUCGCAAUGAGUCACUAUGAGUGCUCACAUUUAGGCACUGACAGAAAAUUA
---............(((.(((((((.(((((((..((((..(((.....))).)))).))))..))).((((.(((.....)))))))...))))))))))........... ( -28.20)
>DroSec_CAF1 8666 110 - 1
---UAUGUAAAAACACAGCUGCCUGGCUGCUGCUGCUGGACACGGAAAUAUCGAUCCAAAGUAUCGCAAUGAGUCACUACGAGUGCUCACAUUUAGGCACUGACAGAAAAUUA
---............(((.(((((((.(((((((..((((..(((.....))).)))).))))..))).((((.(((.....)))))))...))))))))))........... ( -28.20)
>DroSim_CAF1 8754 112 - 1
-UAUAUGUAAAAACACAGCUGCCUGGCUGCUGCUGCUGGACACGGAAAUAUCGAUCCAAAGUAUCGCAAUGAGUCACUACGAGUGCUCACAUUUAGGCACUGACAGAAAAUUA
-..............(((.(((((((.(((((((..((((..(((.....))).)))).))))..))).((((.(((.....)))))))...))))))))))........... ( -28.20)
>DroYak_CAF1 8831 103 - 1
A---------AAACACAGCUGCCUGGCUGCUGCUGCUGGACACGGAAAUAUCGAUCCAAAGUAUCGCAAUGAGUCACUAUGAGUGCUCACAUUUAGGCACUGACAAAAAA-GA
.---------.....(((.(((((((.(((((((..((((..(((.....))).)))).))))..))).((((.(((.....)))))))...))))))))))........-.. ( -28.20)
>consensus
___UAUGUAAAAACACAGCUGCCUGGCUGCUGCUGCUGGACACGGAAAUAUCGAUCCAAAGUAUCGCAAUGAGUCACUACGAGUGCUCACAUUUAGGCACUGACAGAAAAUUA
...............(((.(((((((.(((((((..((((..(((.....))).)))).))))..))).((((.(((.....)))))))...))))))))))........... (-28.20 = -28.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:08 2006