Locus 1446

Sequence ID X_DroMel_CAF1
Location 4,359,457 – 4,359,552
Length 95
Max. P 0.570843
window2306

overview

Window 6

Location 4,359,457 – 4,359,552
Length 95
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 83.22
Mean single sequence MFE -22.26
Consensus MFE -15.34
Energy contribution -16.23
Covariance contribution 0.89
Combinations/Pair 1.10
Mean z-score -1.80
Structure conservation index 0.69
SVM decision value 0.07
SVM RNA-class probability 0.570843
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4359457 95 + 22224390
CCAAGCAUCGAAUCCCAUGGAAAGGCCAACCAAACUAAACCCUCUUCGUGCACAAAAGUCGCCAUUUAGCGUUCAAGUGCUCG------GAUUCAGAUUCA
....(.(((((((((.(((((.(((...............))).)))))((((......(((......))).....))))..)------))))).))).). ( -20.96)
>DroSec_CAF1 145111 91 + 1
-----CAUCGAAUCCCUUGGAAAAGCCAACCAAACUAAACCCUCCUCGUGCACAAAAGUCGCCAUUUAGCGUUCAAGUGCACG-----GGAUUCAGAUUCA
-----....(((((((((((.....))))..................((((((......(((......))).....)))))))-----))))))....... ( -27.40)
>DroYak_CAF1 147367 100 + 1
GCAAGCAUCGAAUCCCCUG-AGAAGCCAACAAAACUAAACCCUCCUGAAGCACAAAAGUCGCCAUUUAGCGUUCAAGUGCUCGCAUUCGGAUUUGGAUUGA
.(((...((((((((...(-((...................)))..((.((((......(((......))).....))))))......)))))))).))). ( -18.41)
>consensus
_CAAGCAUCGAAUCCCAUGGAAAAGCCAACCAAACUAAACCCUCCUCGUGCACAAAAGUCGCCAUUUAGCGUUCAAGUGCUCG_____GGAUUCAGAUUCA
......(((((((((..(((.....)))...................((((((......(((......))).....))))))......)))))).)))... (-15.34 = -16.23 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:37 2006