| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,348,521 – 4,348,611 |
| Length | 90 |
| Max. P | 0.666204 |
| Location | 4,348,521 – 4,348,611 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 74.91 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -10.15 |
| Energy contribution | -10.45 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666204 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4348521 90 + 22224390 GUAUGUGCGAUUCACACCUGCGGACCCCAGCAGGUGAA----UAUGUAUACAUACAUAUG-----GCCAA--CUCAAUUCCAUUUGCCAGGCAGCCA-CACA ((.((.((......(((((((........))))))).(----((((((....))))))).-----(((..--..(((......)))...))).))))-.)). ( -26.20) >DroPse_CAF1 157452 84 + 1 GUAUAUUUGCUUCACACCUGUGGACCCCGGCCCG-GAAUGAG--GGAAU----------C-----CCCAAUCCCCAAUCCCCUAUCCCAAUCAGAAUGGGAA (((....)))(((((....)))))....((...(-((.((.(--(((..----------.-----.....)))))).)))))..(((((.......))))). ( -20.60) >DroSec_CAF1 134097 93 + 1 GUAUGUGCGAUUCACACCUGCGGACUCCAGCAGGUGAAUGAAUAUGUAUAC--ACAUAUG-----GCCAA--CUCAAUUCCAUUUGCCAGCCAGCCGCCACA ((.((((((((((((((((((........)))))))..))))).)))))).--))...((-----((...--..(((......)))...))))......... ( -26.80) >DroSim_CAF1 127538 93 + 1 GUAUGUGCGAUUCACACCUGCGGACCCCAGCUGGUGAAUGAAUAUGUAUAC--ACAUAUG-----GCCAA--CUCAAUUCCAUUUGCCAGCCAGCCGCCACA ...((((.....))))...((((......(((((..((((.((((((....--))))))(-----.....--).......))))..)))))...)))).... ( -25.40) >DroEre_CAF1 142646 81 + 1 -CAUGUGCGAUUCACACCUGCGGACCCCAGCAGGUGUA----UAUGUAUAC--CCAUAUG-----GCCAA--CUCAAUUCCAUUUGCCAGC-------CACA -..(((((.((..((((((((........)))))))).----.))))))).--.....((-----((...--..(((......)))...))-------)).. ( -22.20) >DroYak_CAF1 136350 87 + 1 GUAUGUGCGAUUCACACCUGCGGACCCCAGCAGGUGAA----UAUGUAUAC--ACACAUGAGCAGGCCAA--CUCAAUUCCAUUUGCCAGU-------CACA .....(((......(((((((........)))))))..----(((((....--..))))).)))(((...--.............)))...-------.... ( -20.99) >consensus GUAUGUGCGAUUCACACCUGCGGACCCCAGCAGGUGAA____UAUGUAUAC__ACAUAUG_____GCCAA__CUCAAUUCCAUUUGCCAGCCAGCC__CACA ...((((((.....(((((((........)))))))........)))))).................................................... (-10.15 = -10.45 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:35 2006