Locus 1437

Sequence ID X_DroMel_CAF1
Location 4,333,147 – 4,333,242
Length 95
Max. P 0.612813
window2295

overview

Window 5

Location 4,333,147 – 4,333,242
Length 95
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 80.36
Mean single sequence MFE -17.70
Consensus MFE -12.53
Energy contribution -13.20
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.71
SVM decision value 0.16
SVM RNA-class probability 0.612813
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4333147 95 - 22224390
---CCAACGCCGCCCUC----CGGAACGCUUCCUCGCGCUGUCCCUCUGUCUCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU
---..............----.(((.(((......)))...)))...............(((..((((((.((.(((....)))....)).))))))..))) ( -18.70)
>DroPse_CAF1 140380 72 - 1
---CCG------CC--------------CC-UCUGGGGUUGU----CUG--UCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU
---..(------((--------------((-...)))))...----...--........(((..((((((.((.(((....)))....)).))))))..))) ( -19.00)
>DroSim_CAF1 112541 92 - 1
---CCAACG---CCCGC----CGAAACGCUUCCUCGCGCUGUCUGUCUGUCUCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU
---.....(---(..((----.((..(((......)))...)).))..)).........(((..((((((.((.(((....)))....)).))))))..))) ( -17.10)
>DroEre_CAF1 127090 88 - 1
---CCGACG---CCCUC----CGAAACGCUUCCUCGCGCUGU----CUGUCUCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU
---..((((---.....----.((..(((......)))...)----)))))........(((..((((((.((.(((....)))....)).))))))..))) ( -17.30)
>DroYak_CAF1 121021 95 - 1
CCUCCAACG---CCCUCUUCUCAAAACGCUUCCUCGCGCUGU----CUGUGUCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU
.........---..............(((......)))....----.............(((..((((((.((.(((....)))....)).))))))..))) ( -15.10)
>DroPer_CAF1 142399 72 - 1
---CCG------CC--------------CC-UCUGGGGUUGU----CUG--UCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU
---..(------((--------------((-...)))))...----...--........(((..((((((.((.(((....)))....)).))))))..))) ( -19.00)
>consensus
___CCAACG___CCCUC____CGAAACGCUUCCUCGCGCUGU____CUGUCUCUCAUAAAUGUUUUGGCAAUAAAACGCAAGUUAUGAUAAUGCCAAUUCAU
..........................(((......))).....................(((..((((((.((.(((....)))....)).))))))..))) (-12.53 = -13.20 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:27 2006