Locus 1415

Sequence ID X_DroMel_CAF1
Location 4,267,741 – 4,267,839
Length 98
Max. P 0.844614
window2255

overview

Window 5

Location 4,267,741 – 4,267,839
Length 98
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 75.59
Mean single sequence MFE -21.65
Consensus MFE -13.64
Energy contribution -14.64
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.63
SVM decision value 0.76
SVM RNA-class probability 0.844614
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4267741 98 + 22224390
UUGCACUGUAAUUGAGCAAUUGCAGUGGCCACCCA-----------ACCA---CCCACAGCCC---ACGCCCACCCAUUCAAAACGCCCACAAUGGCUGGCAAUUUACUUGACGC
...((((((((((....))))))))))((((....-----------....---......((..---..))...............(((......))))))).............. ( -21.30)
>DroSec_CAF1 54375 98 + 1
UUGCACUGUAAUUGAGCAAUUGCAGUGGCCACCCA-----------ACCA---CCCACAGCCC---ACGCCCACCCAUCCAAAACGCCCACAAUGGCUGGCAAUUUACUUGACGC
...((((((((((....))))))))))((((....-----------....---......((..---..))...............(((......))))))).............. ( -21.30)
>DroEre_CAF1 61342 109 + 1
UUGCACUGUAAUUGAGCAAUUGCAGUGGCCACCCACUCGCCGCCCAACCG---CCCACAGCAC---ACGCCCACCCAUCCAUUAUGCCCACAAUGGCUGGCAGUUUACUUGACGC
...((((((((((....))))))))))((((.(((......((......)---).....((..---..)).......................))).)))).(((.....))).. ( -23.40)
>DroYak_CAF1 55278 87 + 1
UUGCACUGUAAUUGAGCAAUUGCAGUGGCCACCCAA-------------------------AA---ACACCCACCCAUCCAUUACGCCCACAAUGGCUGGCAAUUUACUUGACGC
...((((((((((....))))))))))((((.(((.-------------------------..---...........................))).)))).............. ( -19.41)
>DroAna_CAF1 65535 83 + 1
UUGCACUGUAAUUGAGCAAUUGCAGUCGCCACCCA-----------AGCG---C-CAGAG----------CCACCCACCCA-------CAAAUGGGCUGGCAAUUUGCUUGGCGC
..(((((((((((....))))))))).))...(((-----------((((---.-....(----------(((((((....-------....)))).))))....)))))))... ( -31.60)
>DroPer_CAF1 66686 100 + 1
UUGCACUGUAAUUGAGCAAUUGCCA--CCCACCCA-----------AACAAGCCCCAAAGCCCCAAACUCCACCCCA--CACCACACCAACAACGGCUGGCAAUUUACUUGGCGC
..((...((((.((.((....))))--........-----------.....(((....((((...............--...............)))))))...))))...)).. ( -12.91)
>consensus
UUGCACUGUAAUUGAGCAAUUGCAGUGGCCACCCA___________ACCA___CCCACAGCCC___ACGCCCACCCAUCCAAAACGCCCACAAUGGCUGGCAAUUUACUUGACGC
...((((((((((....))))))))))((((.((............................................................)).)))).............. (-13.64 = -14.64 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:52 2006