Locus 1412

Sequence ID X_DroMel_CAF1
Location 4,254,093 – 4,254,201
Length 108
Max. P 0.812633
window2252

overview

Window 2

Location 4,254,093 – 4,254,201
Length 108
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 87.48
Mean single sequence MFE -40.65
Consensus MFE -32.17
Energy contribution -33.73
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -1.84
Structure conservation index 0.79
SVM decision value 0.65
SVM RNA-class probability 0.812633
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4254093 108 - 22224390
CUCGAUUCCCAGUUCCGGGAGAUGGCGUGUUUGGCCAACUUAUGAGACCGGACACGGACAUCGUCACGGACACGGAAAGGGACAUUGGCAUGGGGAUUGGGAUUGGG--U
((((((.(((((((((....((((.((((((((((((.....)).).)))))))))..))))((((.(..(.(.....))..)..))))...)))))))))))))))--. ( -42.30)
>DroSim_CAF1 35257 110 - 1
CUCGAUUCCCAGUUCCGGGAGAUGGCGUGUUUGGCCAACUUAUGAGACCGGACACGGACAUCGUCACGGACACGGAAAGGGACAUUGGCAUGGGGAUUGGGAUUGGUAUU
((((((((((((((((((..((((.((((((((((((.....)).).)))))))))..))))..).)))).))(........).......)))))))))))......... ( -41.00)
>DroEre_CAF1 47714 95 - 1
CUCGACUCCCAGUUCCCGGAGAUGGCGUGUUUGGCCAC-----------GGACACGGACAUCGUCACGGGCACGGAGAGGGACAUUGGCAUGGGGAUUGGGAUUGG----
..(((.((((((((((((..((((.((((((((....)-----------)))))))..))))(((.((....))......))).......))))))))))))))).---- ( -40.20)
>DroYak_CAF1 41670 101 - 1
CUCGAUUCCCAGUGGCCGGAGAUGGCGUGUUUGGCCAACUUAUG-----AGACACGGACAUCGUCACGGACACGGAAAGGGACAUUGGCAUGGGGAUUGGGACUGG----
(((((((((((...(((((.((((.(((((((.(........).-----)))))))..))))(((.((....))......))).))))).))))))))))).....---- ( -39.10)
>consensus
CUCGAUUCCCAGUUCCCGGAGAUGGCGUGUUUGGCCAACUUAUG_____GGACACGGACAUCGUCACGGACACGGAAAGGGACAUUGGCAUGGGGAUUGGGAUUGG____
((((((((((((((((.(..((((.(((((((((.............)))))))))..))))..).((....))....))))).......)))))))))))......... (-32.17 = -33.73 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:49 2006