Locus 141

Sequence ID X_DroMel_CAF1
Location 527,925 – 528,034
Length 109
Max. P 0.719084
window202

overview

Window 2

Location 527,925 – 528,034
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.53
Mean single sequence MFE -39.60
Consensus MFE -19.76
Energy contribution -19.08
Covariance contribution -0.68
Combinations/Pair 1.29
Mean z-score -2.00
Structure conservation index 0.50
SVM decision value 0.39
SVM RNA-class probability 0.719084
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 527925 109 - 22224390
AUCGUAUGUAUCUGCCCAGCGGCC---AAGGGGUUAAUCAUUUGC----CCAUAUCCGCUGGGG-CUCUAGCGUUGCU---CCCUUGCGCUGUUUAGGUCUUUCAUUUGGCCAUUUGGCC
...(...(.(((((((((((((..---...((((.........))----))....)))))))).-...((((((....---.....))))))..))))))...)....((((....)))) ( -36.90)
>DroSec_CAF1 14631 112 - 1
AUGGUUUGCAUCUGUCCAGCGGCCUUCAAGGGGUUAAUCAUUAGC----CCAUAUCCGCUGGGA-CUCUGGCGUUGCU---CCGUUGCGCUGCUUGGGUCUUUCGUUUGGCCAUUUGGCU
((((((.((......(((((((........((((((.....))))----))....)))))))((-(((.((((.(((.---.....))).)))).)))))....))..))))))...... ( -41.30)
>DroSim_CAF1 14950 112 - 1
AUGGUUUGUAUCUGUCCAGCGGCCAUCAAGGGGUUAAUCAUUAGC----CCAUAUCCGCUGGGA-CUCUGGCGUUGCU---CCGUUGCGCUGCUUGGGUCUUUCGUUUGGCCAUUUGGCC
...............(((((((........((((((.....))))----))....)))))))((-(((.((((.(((.---.....))).)))).)))))........((((....)))) ( -41.20)
>DroEre_CAF1 19541 109 - 1
AUGAUAUGAAUUUGACCGGCAGUCAUCAAGGGGUUAAUCAUCCU----GGCACA---GCUGCGA-CUUUGGCGCUGCU---CUGUUGUGCUGCUUAGGUCUUUCAUUUGGCCUUUUGGCC
.....(((((...(((((((((.(((...(((((.....)))))----((((.(---((.(((.-(....)))).)))---.))))))))))))..)))).)))))..((((....)))) ( -37.10)
>DroYak_CAF1 13968 120 - 1
AUGGUAUCAAUUUGACCAUCGGUCACCAAGGGGUUAAUCAUCCGCCGGGGCUUAACCCCUACGCCCUGUAGCGCUGUUGUGCUGUUGCGCUGCUUAGGUCUUUCAUUUGGCCUUUUGGCA
.((((........((((...))))))))(((((((((...(((....))).)))))))))..(((..(((((((............)))))))..(((((........)))))...))). ( -41.50)
>consensus
AUGGUAUGAAUCUGACCAGCGGCCAUCAAGGGGUUAAUCAUUAGC____CCAUAUCCGCUGGGA_CUCUGGCGUUGCU___CCGUUGCGCUGCUUAGGUCUUUCAUUUGGCCAUUUGGCC
...............(((..(((((..(((((.((((.(..........(((.......))).......(((((.((......)).)))))).)))).)))))....)))))...))).. (-19.76 = -19.08 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:05 2006