Locus 1402

Sequence ID X_DroMel_CAF1
Location 4,226,352 – 4,226,447
Length 95
Max. P 0.617293
window2238

overview

Window 8

Location 4,226,352 – 4,226,447
Length 95
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 80.26
Mean single sequence MFE -28.10
Consensus MFE -22.15
Energy contribution -22.15
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.17
Structure conservation index 0.79
SVM decision value 0.17
SVM RNA-class probability 0.617293
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4226352 95 + 22224390
UGAGGCGUUGAUGGCGAUGGCGCUGAAGCUGGCGCGCAUGUGCAA--CGCAGCCACAAAAUCGCAAUUGCCGGG-------AC--CAAAAACCAAAAUGAAAAAAA
...((((......(((((.(((((......)))))((.((((...--))))))......)))))...))))((.-------..--......))............. ( -25.10)
>DroPse_CAF1 16483 84 + 1
UGAGGCGUUGAUGGCGAUGGCGCUGAAGCUGGCGCGCAUGCGCAGAGCACAACCGCAAAAUCGCA-UUGCCAGC---CA--GCCCCAAAA----------------
...((.((((.(((((((((((((......)))))((.(((.....))).....)).......))-))))))..---))--)).))....---------------- ( -31.20)
>DroSim_CAF1 19135 94 + 1
UGAGGCGUUGAUGGCGAUGGCGCUGAAGCUGGCGCGCAUGUGCAU--CGCAGCCACAAAAUCGCAAUUGCCGGG-------AC--CGAAAACCAAAAUGAAA-AAA
...((((......(((((.(((((......)))))((.((((...--))))))......)))))...))))((.-------..--......)).........-... ( -25.10)
>DroEre_CAF1 13716 94 + 1
UGAGGCGUUGGUGGCGAUGGCGCUGAAGCUGGCGCGCAUGCGCAA--CGCAACCACAAAAUCGCAAUUGCCGGG-------GC--CAAAAACCAAAAUGAAA-AAA
...(((.(((((.(((((.(((((......)))))...((((...--))))........)))))....))))).-------))--)................-... ( -30.70)
>DroYak_CAF1 13710 101 + 1
UGAGGCGUUGAUGGCGAUGGCGCUGAAGCUGGCGCGCAUGUGCAA--CGCAACCACAAAAUCGCAAUUGCCGGGACCCGGGAC--CUAAAACCAAAAUGAAA-AAA
....((((((...((.((((((((......))))).))))).)))--)))...................((((...))))...--.................-... ( -25.30)
>DroPer_CAF1 16126 84 + 1
UGAGGCGUUGAUGGCGAUGGCGCUGAAGCUGGCGCGCAUGCGCAGAGCACAACCGCAAAAUCGCA-UUGCCAGC---CA--GCCCCAAAA----------------
...((.((((.(((((((((((((......)))))((.(((.....))).....)).......))-))))))..---))--)).))....---------------- ( -31.20)
>consensus
UGAGGCGUUGAUGGCGAUGGCGCUGAAGCUGGCGCGCAUGCGCAA__CGCAACCACAAAAUCGCAAUUGCCGGG_______AC__CAAAAACCAAAAUGAAA_AAA
...((((......(((((.(((((......)))))((....))................)))))...))))................................... (-22.15 = -22.15 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:36 2006