Locus 1400

Sequence ID X_DroMel_CAF1
Location 4,224,871 – 4,224,963
Length 92
Max. P 0.582201
window2236

overview

Window 6

Location 4,224,871 – 4,224,963
Length 92
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 82.30
Mean single sequence MFE -24.85
Consensus MFE -21.15
Energy contribution -21.27
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.25
Structure conservation index 0.85
SVM decision value 0.10
SVM RNA-class probability 0.582201
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4224871 92 - 22224390
UCAGUGCUUUGUCACUGUUCUUUUGUGAUCGUUUUCAAAAUUCUUAUAAAAGGUUCUAUAUAGAUCAGGAUCUAGAGGAGUCAGAGCACCGC---------------------
...((((((((.(.....((((((((((..(((.....)))..))))))))))((((...(((((....))))).))))).))))))))...--------------------- ( -24.60)
>DroSec_CAF1 12373 112 - 1
UCAGUGCUUUGGCACUGUUCUUAUGUGAUCGUUUCCA-AAUUCUUAUAAAAGGUUCUAUUUAGAGCAGGAUUCAGAGGAGUCAGAGCACCGCAAUCAUUCAUAUCUUCAUAAG
...((((((((((.(((((((.(((.((((.......-.............)))).)))..)))))))...((....))))))))))))........................ ( -25.25)
>DroSim_CAF1 17751 113 - 1
UCAGUGCUUUGGCACUGUUCUUAUGUGAUCGUUUCCAAAAUUCUUAUAAAAGGUUCUAUUCAGAGCAGGAUUCAGAGGAGUCAGAGCACCGCAAUCAUUCAUAUCUUCAUAAG
...((((((((((.(((((((.(((.((((.....................)))).)))..)))))))...((....))))))))))))........................ ( -24.70)
>consensus
UCAGUGCUUUGGCACUGUUCUUAUGUGAUCGUUUCCAAAAUUCUUAUAAAAGGUUCUAUUUAGAGCAGGAUUCAGAGGAGUCAGAGCACCGCAAUCAUUCAUAUCUUCAUAAG
...((((((((..(((.((((.....((((............(((....)))(((((....)))))..)))).)))).)))))))))))........................ (-21.15 = -21.27 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:33 2006