Locus 140

Sequence ID X_DroMel_CAF1
Location 527,638 – 527,731
Length 93
Max. P 0.500000
window201

overview

Window 1

Location 527,638 – 527,731
Length 93
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.68
Mean single sequence MFE -30.35
Consensus MFE -20.99
Energy contribution -21.39
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.69
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 527638 93 - 22224390
UGAAAGUAAAAGCGACACACUCUCAAACAUGCAAAUCCCGAUGGUCGCUAAUGGCGCCCA---------------------------GUGUGCUGGGCAUCUUGGCCCAUAUAGGCGCAA
..........((((((.((.((.................))))))))))....(((((..---------------------------.((((.(((((......)))))))))))))).. ( -28.23)
>DroSec_CAF1 14347 91 - 1
UGAAAGUAAAAGCGACACAC--UCAAACAUGCAAAUCCCGAUGGUCGCUAAUGGCGCCCA---------------------------GUGUGCUGGGCAUCUUGGCCCAUAUAGGCGCAA
..........((((((.((.--((...............))))))))))....(((((..---------------------------.((((.(((((......)))))))))))))).. ( -28.46)
>DroSim_CAF1 14665 91 - 1
UGAAAGUAAAAGCGACACAC--UCAAACAUGCAAAUCCCGAUGGUCGCUAAUGGCGCCCA---------------------------GUGUGCUGGGCAUCUUGGCCCAUAUAGGCGCAA
..........((((((.((.--((...............))))))))))....(((((..---------------------------.((((.(((((......)))))))))))))).. ( -28.46)
>DroEre_CAF1 19250 92 - 1
UGAAAGUAAAAGCGACACACUCUCAAACAUGCAAAUCCCGAUGGUCGCUAAUGGCGCCCA---------------------------GUGUGCCGGGCAUCUUGGC-CAUAUAGGCGCAA
..........((((((.((.((.................))))))))))....(((((..---------------------------(((.((((((...))))))-)))...))))).. ( -27.83)
>DroYak_CAF1 13627 120 - 1
UGAAAGUAAAAGCGACACACUCUCCAACAUGCAAAUCCCGAUGGUCGCUAAUGGCGCCCAGUUUGCCCAGUUUGCCCACUAUGCCCAGUGUGGCGGGCAUCUUGGCCCAUAUAGGCGCAA
..........((((((.((.((.................))))))))))....(((((......(((.((..(((((.((((((...)))))).))))).)).))).......))))).. ( -38.75)
>consensus
UGAAAGUAAAAGCGACACACUCUCAAACAUGCAAAUCCCGAUGGUCGCUAAUGGCGCCCA___________________________GUGUGCUGGGCAUCUUGGCCCAUAUAGGCGCAA
..........((((((.((......................))))))))....(((((.............................(....).((((......)))).....))))).. (-20.99 = -21.39 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:03 2006