Locus 1396

Sequence ID X_DroMel_CAF1
Location 4,203,255 – 4,203,355
Length 100
Max. P 0.992120
window2227

overview

Window 7

Location 4,203,255 – 4,203,355
Length 100
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 75.70
Mean single sequence MFE -28.65
Consensus MFE -17.26
Energy contribution -17.20
Covariance contribution -0.06
Combinations/Pair 1.14
Mean z-score -2.46
Structure conservation index 0.60
SVM decision value 2.31
SVM RNA-class probability 0.992120
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4203255 100 + 22224390
CAAG-------------UGCAUCUGAUGUGCACACUCCGUUUGGGAAUA------UGGCUGCAUUGUUUGGAAACUUUGCGGUGGUAAACAAAUUACAUGGAAAUUUGUACUAAUUAUA
...(-------------(((((.....))))))..(((.....))).((------(.((((((..(((....)))..)))))).))).(((((((.......))))))).......... ( -25.70)
>DroSec_CAF1 37227 100 + 1
CAAG-------------UGCAUCUAAUAUGCACAGUCCGUUUGGGAAUA------CGACUGCAUUGUUUGGAAACUUUGCGGUGGUAAACAAAUUACAUGCAGAUUUGUACAAACUAUA
...(-------------(((((.....)))))).....(((((....((------(.((((((..(((....)))..)))))).))).(((((((.......))))))).))))).... ( -29.60)
>DroEre_CAF1 36973 113 + 1
CAAGUAAAUCGGCUUCGUGCAUCUUAUGUGCACAGUCCGUUUGGGAAUA------UGACUGCAUUGUUUAGAAACUUUGCAGUGGUAAACAAAUUACCCACCAAANNNNNNNNNNNNNN
.........(((((..((((((.....)))))))).)))(((((.....------..((((((..(((....)))..))))))(((((.....)))))..))))).............. ( -27.90)
>DroYak_CAF1 39650 119 + 1
CAAGUAAAUCGGGUUCGUGCAUCUAAUGUGCACAGUCCGUUUGGGAAUAUGAGUAUGACUGCAUUGUUUAGAAACAUUGCGGUGGUAAACAAAUUACAUACAAAUUUGUACUAAUUAUA
..((((....((..(.((((((.....)))))))..))((.((..(((.((..(((.((((((.((((....)))).)))))).)))..)).))).)).)).......))))....... ( -31.40)
>consensus
CAAG_____________UGCAUCUAAUGUGCACAGUCCGUUUGGGAAUA______UGACUGCAUUGUUUAGAAACUUUGCGGUGGUAAACAAAUUACAUACAAAUUUGUACUAAUUAUA
................((((((.....))))))..(((.....)))...........((((((..(((....)))..)))))).((((.....))))...................... (-17.26 = -17.20 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:21 2006