| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,169,196 – 4,169,289 |
| Length | 93 |
| Max. P | 0.708955 |
| Location | 4,169,196 – 4,169,289 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 82.96 |
| Mean single sequence MFE | -24.05 |
| Consensus MFE | -16.25 |
| Energy contribution | -17.43 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4169196 93 - 22224390 GGCUGGCGGACUGGCAAAUUGUUGUUUGCUCUGCCGACGUCGUUUUUUGCGUGUGUAAAUUUGAAUACUUCAAUUUUAUGUGUGCUUUUCC-------CU ((((((((((...((((((....)))))))))))))..))).......(((..((((((.((((.....)))).))))))..)))......-------.. ( -27.80) >DroSim_CAF1 2009 100 - 1 GGCGGGCGGCCUGGCAAAUUGUUGUUUGCUCUGCCGACGUCGUUUUUUGCGUGUGUAAAUUUGAAUGCUUCAAUUUUAUGUGUGCUUUUCCCCUCACCCU ((((..((((..(((((((....)))))))..)))).)))).......(((..((((((.((((.....)))).))))))..)))............... ( -32.20) >DroEre_CAF1 1991 85 - 1 UUUG--------GGCAAAAUUUUGUUUGCUCUGCCGACGUCGUUUUUUGCGUGUGUAAAUUUGAAUGCUUCAAUUUUAUGUGUGCUCCUCCCA------- ..((--------((.(((((..((((.((...)).))))..)))))..(((..((((((.((((.....)))).))))))..)))....))))------- ( -19.30) >DroYak_CAF1 2016 85 - 1 AACG--------GGCAAAUUGUUGUUUGCUCUGCCGACGUCGUUUUUUGCGUGUGUAAAUUUGAAUGCUUCAAUUCUAUGUGUGCUUUUCCCC------- ...(--------(((((((....)))))))).................(((..((((...((((.....))))...))))..)))........------- ( -16.90) >consensus GGCG________GGCAAAUUGUUGUUUGCUCUGCCGACGUCGUUUUUUGCGUGUGUAAAUUUGAAUGCUUCAAUUUUAUGUGUGCUUUUCCCC_______ ((((........(((((((....))))))).......)))).......(((..((((((.((((.....)))).))))))..)))............... (-16.25 = -17.43 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:04 2006