Locus 1363

Sequence ID X_DroMel_CAF1
Location 4,080,561 – 4,080,661
Length 100
Max. P 0.939229
window2168

overview

Window 8

Location 4,080,561 – 4,080,661
Length 100
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 91.31
Mean single sequence MFE -16.94
Consensus MFE -14.81
Energy contribution -14.49
Covariance contribution -0.32
Combinations/Pair 1.11
Mean z-score -1.63
Structure conservation index 0.87
SVM decision value 1.28
SVM RNA-class probability 0.939229
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4080561 100 - 22224390
UUAUCGGAUUCAAAAAAAAAAAAAAACCACUUUAGCAACCCACAA-ACCACUUAUUAUUGGAGCUUUAAGCAAAUUAUUGCUGUCGCUUGAGUCCCAAAAA
.....((((((((................................-.(((........))).((....(((((....)))))...))))))))))...... ( -17.30)
>DroSec_CAF1 93269 91 - 1
UUAUCGGAUUCAAA---------AAACCACUUUAGCAACCCACAA-ACCUCUUAUUAUUGGAGCUUUAAGCGAAUUAUUGCUGUCGCUUGAGUCCCAAAAA
.....((((((...---------....................((-(.((((.......)))).)))((((((..........))))))))))))...... ( -16.40)
>DroSim_CAF1 93790 91 - 1
UUAUCGGAUUCAAA---------AAACCACUUUAGCAACCCACAA-ACCUCUUAUUAUUGGAGCUUUAAGCGAAUUAUUGCUGUCGCUUGAGUCCCAAAAA
.....((((((...---------....................((-(.((((.......)))).)))((((((..........))))))))))))...... ( -16.40)
>DroEre_CAF1 98818 96 - 1
UUAUCGGAUUCAAAAAAAA----AAAACACUUUAGCAACCCACAA-ACCUCUUAUUAUUGGAGCUUUAAGCGAAUUAUUGCUGUCGGUUGAGUCCCGAAAA
...((((((((......((----(......)))...((((.((((-(.((((.......)))).))).(((((....))))))).)))))))).))))... ( -17.40)
>DroYak_CAF1 92216 92 - 1
UUAUCGGAUUCAAAA---------AACCACUUUAGCAACCCACAAAACCUCUUAUUAUUGGAGCUUUAAGCGAAUUAUUGCUGUCGGUUGGGUCCCAAAAC
.....(((((((...---------.(((....((((((.........((..........)).((.....))......))))))..))))))))))...... ( -17.20)
>consensus
UUAUCGGAUUCAAAA________AAACCACUUUAGCAACCCACAA_ACCUCUUAUUAUUGGAGCUUUAAGCGAAUUAUUGCUGUCGCUUGAGUCCCAAAAA
.....((((((((....................(((...(((................))).)))...(((((....))))).....))))))))...... (-14.81 = -14.49 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:23 2006