Locus 1361

Sequence ID X_DroMel_CAF1
Location 4,073,921 – 4,074,027
Length 106
Max. P 0.783977
window2166

overview

Window 6

Location 4,073,921 – 4,074,027
Length 106
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 73.23
Mean single sequence MFE -19.97
Consensus MFE -12.32
Energy contribution -12.12
Covariance contribution -0.20
Combinations/Pair 1.27
Mean z-score -1.62
Structure conservation index 0.62
SVM decision value 0.57
SVM RNA-class probability 0.783977
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4073921 106 - 22224390
CAAAACAAAACGAAAAAGUGGGAAAAAAAUAGAAAAUCAAAAACGAUACUGACGUUUAGCUAAGCGCCGUGAAAGGCCUUGACUAUGUAUCGGAUGUGUCCCAUUU----
...............((((((((............(((......))).((((..(.(((.((((.(((......))))))).))).)..)))).....))))))))---- ( -24.80)
>DroSec_CAF1 86747 106 - 1
AAAAAAACAAAAAAAAAGUUUCAAAAAAAUAGAAAAUCAAAAACGAUCCUGACGUUUAGCUAAGCGCCGUGAAAGGCCUUGACUAUGUAUCGGAUGUGUCCCAUUU----
..........................................((.((((.((..(.(((.((((.(((......))))))).))).)..)))))))).........---- ( -16.30)
>DroSim_CAF1 85651 105 - 1
AAAAACACAAAA-AAAAGUUUUAAAAAAAUAGAAAAUCAAAAACGAUCCUGACGUUUAGCUAAGCGCCGUGAAAGGCCUUGACUAUGUAUCGGAUGUGUCCCAUUU----
....((((....-....(((((.................))))).((((.((..(.(((.((((.(((......))))))).))).)..)))))))))).......---- ( -19.63)
>DroYak_CAF1 85590 87 - 1
-------------AGA------AAAAAAAUAGAAUAUCAAAAACGAUCCUGACGUUUAGUUAAGCGCCGUGAAAGGCCUUGACUGUGUAUCGGAUGUGUCCCAUUU----
-------------...------....................((.((((.((..(.((((((((.(((......))))))))))).)..)))))))).........---- ( -20.60)
>DroAna_CAF1 103690 88 - 1
GGAAAAAAAAA--GAAAGUGCCGG--------AAAACCA--------GUUGAUGCUUAGUUAAACGCCGUGAAAGGCCUUGACUUUGUAUUGGAUAUU----AUUGGGAA
...........--.......((.(--------(......--------.(..((((..((((((..(((......))).))))))..))))..).....----.)).)).. ( -18.52)
>consensus
AAAAAAAAAAA__AAAAGUGUCAAAAAAAUAGAAAAUCAAAAACGAUCCUGACGUUUAGCUAAGCGCCGUGAAAGGCCUUGACUAUGUAUCGGAUGUGUCCCAUUU____
................................................((((..(.(((.((((.(((......))))))).))).)..))))................. (-12.32 = -12.12 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:21 2006