Locus 1359

Sequence ID X_DroMel_CAF1
Location 4,067,921 – 4,068,014
Length 93
Max. P 0.973249
window2164

overview

Window 4

Location 4,067,921 – 4,068,014
Length 93
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 77.16
Mean single sequence MFE -35.30
Consensus MFE -17.89
Energy contribution -19.90
Covariance contribution 2.00
Combinations/Pair 1.27
Mean z-score -2.63
Structure conservation index 0.51
SVM decision value 1.71
SVM RNA-class probability 0.973249
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4067921 93 - 22224390
G---------------CAACUGUCGUGGUCUUGCCGCUGCAGUCAUUGGCCACAUUGGUGAUCAAGUGACUCAGCAAAUCAACCACAAGCAACACGCUCAAAUCCACA
.---------------........((((..(((..((((.((((((((..(((....)))..).)))))))))))............(((.....))))))..)))). ( -27.80)
>DroSec_CAF1 80655 108 - 1
GGACUUGUGAUGGGUGUAACUGUAGUGGUCUUGCCGCUGCAGUCGUUGGCCACAUUGGUGAUCAAGUGGCUCAGCAAAUCAACCACAAGCAACACGCUCAAAUCCACA
(((....(((.(.((((.((((((((((.....)))))))))).(((((((((.(((.....)))))))).))))................)))).))))..)))... ( -41.30)
>DroSim_CAF1 79640 108 - 1
GGACUUGUGAUGGGUUUAACUGUAGUGGUCUUGCCGCUGCAGUCGUUGGCCACAUUGGUGAUCAAGUGGCUCAGCAAAUCAACCACAAGCAACACGCUCAAAUCCACA
(((.(((((...(((((.((((((((((.....)))))))))).(((((((((.(((.....)))))))).)))))))))...)))))((.....)).....)))... ( -41.50)
>DroEre_CAF1 80020 105 - 1
GGACUUGUAACGGGUGUAACUGUCGUAG---UGCCGCUGCAGUCAUUGGCCACAUUGGUGAUCAAGUGACUCAGCAAAUCAACCACAAGCAACACGCUCAAAUCCACA
(((.(((...((((..(.((....)).)---..))((((.((((((((..(((....)))..).)))))))))))...................))..))).)))... ( -30.50)
>DroYak_CAF1 79691 105 - 1
GGACUUGUAAUGGGUGUGACUGUCGUGG---UGCCGCUGCAGUCAUUGGCCACAGUGGUGAUCAAGUGACUCAGCAAAUCAACCACAAGCAACACGCUCAAAUCCACA
(((.(((....(.((((..((...((((---(...((((.((((((((..(((....)))..).)))))))))))......))))).))..)))).).))).)))... ( -37.30)
>DroPer_CAF1 108389 96 - 1
GUGUCCGUUACGGGUGUAUC------------GGUGCUGCAGUCGUUGGCCACAUCCCCAAUGAGUUGGUUCAGCACACCCACAUCUGCCAGCACAUUAGCGUUCACA
(((..((((((((.....))------------)((((((((((((((((........)))))))((.(((.......))).))..))).))))))..)))))..))). ( -33.40)
>consensus
GGACUUGUAAUGGGUGUAACUGUCGUGG___UGCCGCUGCAGUCAUUGGCCACAUUGGUGAUCAAGUGACUCAGCAAAUCAACCACAAGCAACACGCUCAAAUCCACA
..........(((((((.......((((.......((((.((((((((..(((....)))..))).))))))))).......)))).......)))))))........ (-17.89 = -19.90 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:19 2006