Locus 1351

Sequence ID X_DroMel_CAF1
Location 4,041,332 – 4,041,434
Length 102
Max. P 0.597456
window2153

overview

Window 3

Location 4,041,332 – 4,041,434
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 82.33
Mean single sequence MFE -19.37
Consensus MFE -18.07
Energy contribution -18.40
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -0.30
Structure conservation index 0.93
SVM decision value 0.13
SVM RNA-class probability 0.597456
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4041332 102 + 22224390
ACGUGCUCCUUCCAUCCACUCCACUCGACUCCUCUCCAUCGCCCGAUCCCUCGGCACAGAUAAUGCCCGUUAGCCGUAUCUGUAUCUGGGUUUGCUGACUCA
.((.((....((((..........................(((.((....)))))(((((((..((......))..)))))))...))))...))))..... ( -18.50)
>DroSec_CAF1 54955 79 + 1
CCGUGCUC-----------------------CUCUCCGUCGCCCGAUCCCUCGGCACAGAUAAUGCCCGUUAGCCGUAUCUGUAUCUGGGUUUGCUGACUCA
........-----------------------......((((..(((.(((..(..(((((((..((......))..)))))))..).))).))).))))... ( -19.80)
>DroSim_CAF1 52201 79 + 1
CCGUGCUC-----------------------CUCUCCGUCGCCCGAUCCCUCGGCACAGAUAAUGCCCGUUAGCCGUAUCUGUAUCUGGGUUUGCUGACUCA
........-----------------------......((((..(((.(((..(..(((((((..((......))..)))))))..).))).))).))))... ( -19.80)
>consensus
CCGUGCUC_______________________CUCUCCGUCGCCCGAUCCCUCGGCACAGAUAAUGCCCGUUAGCCGUAUCUGUAUCUGGGUUUGCUGACUCA
.....................................((((..(((.(((..(..(((((((..((......))..)))))))..).))).))).))))... (-18.07 = -18.40 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:09 2006