Locus 1348

Sequence ID X_DroMel_CAF1
Location 4,033,827 – 4,033,929
Length 102
Max. P 0.524402
window2150

overview

Window 0

Location 4,033,827 – 4,033,929
Length 102
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 81.19
Mean single sequence MFE -27.86
Consensus MFE -18.80
Energy contribution -18.16
Covariance contribution -0.64
Combinations/Pair 1.29
Mean z-score -1.57
Structure conservation index 0.67
SVM decision value -0.02
SVM RNA-class probability 0.524402
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4033827 102 + 22224390
GUGGGCUAAAGUUACUGCAUGGUCCACUAGGUAACUCUGGGGCACGGAAUAAUCAAAGCCUCUUGCCACUUA-AUUGAGGAAAAACUCUUCGUAUAUUAUA---AU-----
((((((((..((....)).))))))))..(((((....(((((...((....))...)))))))))).....-...(((((.....)))))..........---..----- ( -26.50)
>DroSec_CAF1 47510 99 + 1
GUGGGCUAAAGUUGCUGCAUGGUCCACUAGGUAAUUCUGGGGCACGGAAUAAUCAAAGCCUCUUCCCAAUUAAAUUGGGGAAAAACUCUUCGGAUAUUA------------
((((((((..((....)).))))))))..(((.((((((.....)))))).)))........((((((((...)))))))).....((....)).....------------ ( -27.70)
>DroSim_CAF1 43767 98 + 1
GUGGGCUAAAGCUGCUGCAUGGUCCACUAGGUAACUCUGGGGCACGGAAUAAUCAAAGCCUCUUGCCACUUA-AUUGGGGAAAAACUCUUCGGAUAUUA------------
((((((((..((....)).))))))))..(((((....(((((...((....))...)))))))))).....-.(((((((.....)))))))......------------ ( -28.40)
>DroEre_CAF1 47266 108 + 1
GUGGGCUAAAGUUACUGCAUGGCCCACUAGAUAACUCUCGGGCACAGAAUAAUGAAAGCCU--UGCUUUUUA-AUGGAGGAAAAACUCUCCAGAUAUUAGGUGAGCGAAAG
((((((((..((....)).)))))))).......((.(((..(((..((((..((((((..--.))))))..-.((((((......))))))..))))..)))..))).)) ( -32.40)
>DroYak_CAF1 45914 104 + 1
GUGGGAUAAAGUUACUGCAUGGUCCACUAGAUAACUCUGUGGCACAGAAUAAUGAAAGCCUCAUGCCUCUUA-AUCGAGGAAAGCCUCGGCAGAUAAUAAA---AUGA---
..........((((((((...((((((.(((....))))))).))(((...((((.....))))...)))..-..(((((....))))))))).))))...---....--- ( -24.30)
>consensus
GUGGGCUAAAGUUACUGCAUGGUCCACUAGGUAACUCUGGGGCACGGAAUAAUCAAAGCCUCUUGCCACUUA_AUUGAGGAAAAACUCUUCGGAUAUUA____________
((((((((..((....)).))))))))........((((((((..............)))................(((......))).)))))................. (-18.80 = -18.16 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:06 2006