Locus 131

Sequence ID X_DroMel_CAF1
Location 520,994 – 521,099
Length 105
Max. P 0.987428
window183

overview

Window 3

Location 520,994 – 521,099
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.43
Mean single sequence MFE -26.51
Consensus MFE -21.78
Energy contribution -21.62
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -2.28
Structure conservation index 0.82
SVM decision value 2.08
SVM RNA-class probability 0.987428
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 520994 105 - 22224390
GCAGCAGGAUAUCCUUGCAGGAGUGUCG-------AGCGGCAAACAUCGAAAUGCCGAGCGAAAAAAUAAAAUAAAUUGUUCAUUUAGCAAACA--------AGCGAACACACGGCAAAA
((.(((((.....)))))....((((((-------..(((((..........)))))..)))...............(((((.....((.....--------.)))))))))).)).... ( -25.80)
>DroSec_CAF1 7204 105 - 1
GCAGCAGGAUAUCCUUGCAGGAGUGUCG-------AGCGGCAAACAUCGAAAUGCCGAGCGAAAAAAUAAAAUAAAUUGUUCAUUUAGCAAACA--------AGCGAACACACGGCAAAU
((.(((((.....)))))....((((((-------..(((((..........)))))..)))...............(((((.....((.....--------.)))))))))).)).... ( -25.80)
>DroSim_CAF1 7597 105 - 1
GCAGCAGGAUAUCCUUGCAGGAGUGUCG-------AGCGGCAAACAUCGAAAUGCCGAGCGAAAAAAUAAAAUAAAUUGUUCAUUUAGCAAACA--------AGCGAACACACGGCAAAU
((.(((((.....)))))....((((((-------..(((((..........)))))..)))...............(((((.....((.....--------.)))))))))).)).... ( -25.80)
>DroEre_CAF1 7141 113 - 1
GCAGCAGGAUAUCCUUGCAGGAGUGUCG-------AGCGGCAAACAUCGAAAUGCCGAGCGAAAAAAUAAAAUAAAUUGUUCAUUUAGCAAACAAGCGAACAAGCGAACACACAGCAAAU
((.(((((.....)))))....((((((-------..(((((..........)))))..)))...............(((((.(((.((......))....))).)))))))).)).... ( -27.50)
>DroYak_CAF1 6317 112 - 1
GCAGCAGGAUAUCCUUGCAGCAGUGUCGGCAAGUGAGCGGCAAACAUCGAAAUGCCGAGCGAAAAAAUAAAAUAAAUUGUUCAUUUAGCAAAAC--------AGCGAGCACACGGCAAAU
((.(((((.....))))).))..(((((....(((.((((((..........))))((((((..............))))))............--------.))...))).)))))... ( -27.64)
>consensus
GCAGCAGGAUAUCCUUGCAGGAGUGUCG_______AGCGGCAAACAUCGAAAUGCCGAGCGAAAAAAUAAAAUAAAUUGUUCAUUUAGCAAACA________AGCGAACACACGGCAAAU
((.(((((.....)))))....((((((..........((((..........))))((((((..............))))))......................)).))))...)).... (-21.78 = -21.62 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:20 2006