| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,884,872 – 3,884,977 |
| Length | 105 |
| Max. P | 0.715846 |
| Location | 3,884,872 – 3,884,977 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 92.97 |
| Mean single sequence MFE | -30.40 |
| Consensus MFE | -25.60 |
| Energy contribution | -26.60 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715846 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3884872 105 + 22224390 CGCCCCUGGCAACAGCUAAUGUUGAUAAGUGAAGUUAUGACUUUGCCCGCCAGACAAACACACACCAGUGAAAAGUGAACUAAGGAUGUGGAAAAGGGGCCGGGA .(((((((((..((((....))))....(..((((....))))..)..))).........(((((((((.........)))..)).))))....))))))..... ( -32.30) >DroSec_CAF1 2469 103 + 1 CGCCCCUGGCAACAGCUAAUGUUGAUAAGUGAAGUUAUGACUUUGCCCGCCAGACAAACACACACCAG--AAAAGUGAACUAAGGAUGUGGAAAAGGGGCAAGCA .(((((((((..((((....))))....(..((((....))))..)..))).........((((((..--...((....))..)).))))....))))))..... ( -32.70) >DroEre_CAF1 3037 102 + 1 CGCCCCUGGCAACAGCUAAUGUUGAUAAGUGAAGUUAUGACUUUGCCCGCCAGACAAA-ACACACCAG--AACAGUGAACUAAGUACGUGGGAAAGAGGCAAGGA .(((.(((((..((((....))))....(..((((....))))..)..))))).....-.....((((--.((((....))..)).).)))......)))..... ( -26.20) >consensus CGCCCCUGGCAACAGCUAAUGUUGAUAAGUGAAGUUAUGACUUUGCCCGCCAGACAAACACACACCAG__AAAAGUGAACUAAGGAUGUGGAAAAGGGGCAAGGA .(((((((((..((((....))))....(..((((....))))..)..))).........((((((.................)).))))....))))))..... (-25.60 = -26.60 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:05 2006