| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,821,100 – 3,821,197 |
| Length | 97 |
| Max. P | 0.789274 |
| Location | 3,821,100 – 3,821,197 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 83.33 |
| Mean single sequence MFE | -33.48 |
| Consensus MFE | -25.83 |
| Energy contribution | -26.05 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3821100 97 - 22224390 GGUUGGCCAAUUGUUGUGAUUGUUGGCAAUGCAAAAUGCCAGGCAUUCGAAUGCACUGGCGCGUAAUCCGCAGCCGGCAAUCGAGA--GAA-CGACUUGA ((....))..(((((.(((((((((((..........(((((((((....)))).)))))(((.....))).)))))))))))...--.))-)))..... ( -37.00) >DroPse_CAF1 8270 85 - 1 -----------UGUUGUUAUUGUUGGCAAUGGAAAA-GCCGGGCAUUCGGAUGCACUGGCCCGGAAGCCGCAGCCGGCAGUCGGGA--GAG-CGACUUGA -----------.(((((((((((((((..(((....-.((((((...(((.....)))))))))...)))..)))))))))(....--)))-)))).... ( -32.80) >DroEre_CAF1 7583 97 - 1 UGUUGGCCAAUUGUUGUGAUUGUUGGCAAUGCAAAAUGCCAGGCAUUCGAAUGCACUGGCGCGUAAUCCGCAGCCGGCAAUCGAGA--GAA-AGACUUGA ..........((.((.(((((((((((..........(((((((((....)))).)))))(((.....))).))))))))))).))--.))-........ ( -34.40) >DroYak_CAF1 6843 97 - 1 UGUUGUCCAAUUGUUGUGAUUGUUGGCAAUGCAAAAUGCCAGGCAUUCGAAUGCACUGGCGCGUAAUCCGCAGCCGGCAAUCGAGA--GAA-CGACUUGA .......((((((((.(((((((((((..........(((((((((....)))).)))))(((.....))).)))))))))))...--.))-))).))). ( -36.80) >DroAna_CAF1 4590 97 - 1 UUUUAGCCCAUUGUUAUUAUUGUUGGCAAUGCAA-AUGCCUGGCAUUCGGAUGCACUCGCGCGUAAUCCGCAGCCGGCAAUCGAAA--GACUUGACUUGA ........((((((((.......))))))))(((-.((((.(((...(((((..((......)).)))))..))))))).((....--)).)))...... ( -26.20) >DroPer_CAF1 8626 87 - 1 -----------UGUUGUUAUUGUUGGCAAUGGAAAA-GCCGGGCAUUCGGAUGCACUGGCCCGGAAGCCGCAGCCGGCAGUCGGGAGAGAG-CGACUUGA -----------.((((((.((((((((..(((....-.((((((...(((.....)))))))))...)))..))))))))((....)).))-)))).... ( -33.70) >consensus UGUUGGCCAAUUGUUGUGAUUGUUGGCAAUGCAAAAUGCCAGGCAUUCGAAUGCACUGGCGCGUAAUCCGCAGCCGGCAAUCGAGA__GAA_CGACUUGA ...................((((((((..........(((((((((....)))).)))))(((.....))).))))))))(((((..........))))) (-25.83 = -26.05 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:42 2006