Locus 1262

Sequence ID X_DroMel_CAF1
Location 3,760,205 – 3,760,322
Length 117
Max. P 0.639106
window2028

overview

Window 8

Location 3,760,205 – 3,760,322
Length 117
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 91.38
Mean single sequence MFE -39.23
Consensus MFE -30.38
Energy contribution -30.38
Covariance contribution 0.00
Combinations/Pair 1.12
Mean z-score -1.74
Structure conservation index 0.77
SVM decision value 0.22
SVM RNA-class probability 0.639106
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3760205 117 + 22224390
CAAGAAGAUGUUGCAGCCGCCUGGCUUUCUGGAGGUUAAGUGCCAGCCCCGAAUGAAACUAGGUUCUUGCGGUUGGCUAAGGACCUGUAACUAAGGUCAAUGCAAGUGCAGCAUAAC
.......((((((((...((.(((((((.((.(((((....(((((((.(((..(((......)))))).)))))))....))))).))...)))))))..))...))))))))... ( -39.20)
>DroSec_CAF1 13743 115 + 1
CAAGAAGAUGUUGCAGCCGUC--GCUUUCUGGAGGUUAAGUGCCAGCCCUGAAUGAAUCUGGGUUCUUGCGGUUGGCUAAGGACCUUUAACUAAGGUCAAUGCAAGUGCAGCAUUAC
......(((((((((((....--(((((.((((((((....((((((((.....((((....))))..).)))))))....))))))))...)))))....))...))))))))).. ( -38.10)
>DroEre_CAF1 14622 115 + 1
CAAGAAGAUGUUGCAGCCGCC--GCCUGCUGGAGGUUAAGUGCCAGCCCUGAAUGAAACUAGGUUGUUGCGGUUAGCUAAGGACCUGUAUCUGAGGGCAAUGCAAGUGCAGCAUUAC
......(((((((((...(((--.((....)).)))....(((..(((((.(..((.((.(((((.((((.....)).)).))))))).))).)))))...)))..))))))))).. ( -39.70)
>DroYak_CAF1 14037 115 + 1
CAAGAAGAUGUUGCAGCCGCC--GCUUUCUGGAGGUUAAGUAGCAGCCCUGAAUGAAACUAGGUUGUUGCGGUUAGCUAGGGACCUGUAUCUAAGGUCAAUGCGAGUGCAGCAUUAC
......(((((((((..(((.--....(((((.......(((((((((..(.......)..)))))))))......)))))(((((.......)))))...)))..))))))))).. ( -39.92)
>consensus
CAAGAAGAUGUUGCAGCCGCC__GCUUUCUGGAGGUUAAGUGCCAGCCCUGAAUGAAACUAGGUUCUUGCGGUUAGCUAAGGACCUGUAACUAAGGUCAAUGCAAGUGCAGCAUUAC
......((((((((((((((...((((((.((.((((.......))))))....))....))))....)))))).((....(((((.......)))))...))....)))))))).. (-30.38 = -30.38 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:17 2006