Locus 1260

Sequence ID X_DroMel_CAF1
Location 3,751,732 – 3,751,823
Length 91
Max. P 0.695002
window2025 window2026

overview

Window 5

Location 3,751,732 – 3,751,823
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 94.14
Mean single sequence MFE -35.33
Consensus MFE -34.09
Energy contribution -33.77
Covariance contribution -0.33
Combinations/Pair 1.11
Mean z-score -1.59
Structure conservation index 0.96
SVM decision value 0.34
SVM RNA-class probability 0.695002
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3751732 91 + 22224390
AUCGUAGUGCAGCUGCUGCUGCAUCUGCUGUUGUUCCAUGGCCUGGUUAUAGCCGUAUGCAGAUGCCGAGGUGCUCGGCCCCUGGUUGUAA
...((((((((((....)))))).)))).........(..(((.(((....)))......((..((((((...))))))..)))))..).. ( -32.30)
>DroSim_CAF1 5529 91 + 1
AUCGUAGUGCAGCUGCUGCUGCAUCUGCUGUUGCUCCAUGGCCUGGUUAUAGCCGUAGGCAGAUGCCGAGGUGCUCGGCCCCUGGUUGUAA
...((((((((((....)))))).))))..((((.(((.((((.(((....(((...(((....)))..)))))).))))..)))..)))) ( -37.80)
>DroEre_CAF1 5631 91 + 1
AUCGUAGUGCAGCUGCUGUUGCAUCUGCUGAUGCUCCAUGGUCUGGUUAUAGCCGUAGGCAGCUGCCGAGGUGCUGGGCCCCUGGUUGUAG
...((((((((((....)))))).))))...(((.(((.((((..((....(((...(((....)))..)))))..))))..)))..))). ( -35.90)
>consensus
AUCGUAGUGCAGCUGCUGCUGCAUCUGCUGUUGCUCCAUGGCCUGGUUAUAGCCGUAGGCAGAUGCCGAGGUGCUCGGCCCCUGGUUGUAA
...((((((((((....)))))).))))...(((.(((.((((..((....(((...(((....)))..)))))..))))..)))..))). (-34.09 = -33.77 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 3,751,732 – 3,751,823
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 94.14
Mean single sequence MFE -31.47
Consensus MFE -25.07
Energy contribution -25.40
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.42
Structure conservation index 0.80
SVM decision value 0.17
SVM RNA-class probability 0.618205
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3751732 91 - 22224390
UUACAACCAGGGGCCGAGCACCUCGGCAUCUGCAUACGGCUAUAACCAGGCCAUGGAACAACAGCAGAUGCAGCAGCAGCUGCACUACGAU
............((((((...))))))((((((....((((.......)))).((......))))))))(((((....)))))........ ( -32.20)
>DroSim_CAF1 5529 91 - 1
UUACAACCAGGGGCCGAGCACCUCGGCAUCUGCCUACGGCUAUAACCAGGCCAUGGAGCAACAGCAGAUGCAGCAGCAGCUGCACUACGAU
.......(((..((((((...))))))..))).(((.((((.......)))).))).((....))((.((((((....))))))))..... ( -31.40)
>DroEre_CAF1 5631 91 - 1
CUACAACCAGGGGCCCAGCACCUCGGCAGCUGCCUACGGCUAUAACCAGACCAUGGAGCAUCAGCAGAUGCAACAGCAGCUGCACUACGAU
.........((((.......)))).(((((((((((.((((......)).)).))).(((((....)))))....))))))))........ ( -30.80)
>consensus
UUACAACCAGGGGCCGAGCACCUCGGCAUCUGCCUACGGCUAUAACCAGGCCAUGGAGCAACAGCAGAUGCAGCAGCAGCUGCACUACGAU
......(((.((((((((...))))))....((.....))..........)).))).......((((.(((....))).))))........ (-25.07 = -25.40 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:15 2006