Locus 1257

Sequence ID X_DroMel_CAF1
Location 3,750,018 – 3,750,123
Length 105
Max. P 0.533933
window2022

overview

Window 2

Location 3,750,018 – 3,750,123
Length 105
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 88.63
Mean single sequence MFE -29.81
Consensus MFE -21.26
Energy contribution -22.57
Covariance contribution 1.31
Combinations/Pair 1.12
Mean z-score -1.52
Structure conservation index 0.71
SVM decision value 0.00
SVM RNA-class probability 0.533933
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3750018 105 - 22224390
GCUGUGCGCCCUAAUUGGGCUAAUUACGCUAAAAGCCAGCGAGUCUGGGGCAAUUUUC-AAUCAGUUUUCAUCAAGCUCGCUGCUAAGUUGCCUAAUUAUGAGCUG
(((....((((.....))))((((((.((....(((.((((((..(((((.((((...-....)))).)).)))..))))))))).....)).))))))..))).. ( -31.90)
>DroSec_CAF1 3728 105 - 1
GCUGUGCGUCCUAAUUGGGCUAAUUACACUAAAAGCCAGCGGGUCUGGGGCAAUUUUC-AAUCAGUUUUCAUCAAGCUCGCUGCUAAGUAGCCUAAUUAUGAGCUG
.....((.((.(((((((((((...........(((.((((((..(((((.((((...-....)))).)).)))..)))))))))...))))))))))).)))).. ( -30.74)
>DroSim_CAF1 3751 105 - 1
GCUGUGCGCCCUAAUUGGGCUAAUUACACUAAAAGCCAGCGGGUCUGGGGCAAUUUUC-AAUCAGUUUUCAUCAAGCUCGCUGCUAAGUAGCCUAAUUAUGAGCUG
(((....((((.....))))((((((..(((..(((.((((((..(((((.((((...-....)))).)).)))..)))))))))...)))..))))))..))).. ( -30.80)
>DroEre_CAF1 3683 102 - 1
GCUGUCCGCCUUAAUUGGACUAAUUACACUAAAAGCUAGCGGGUCUGGCACAAUUUAAGUAUCAGUU-UCUUCAAGCUAGC---UGAGUAGCCAAAUUACAAGCUG
((((((((.......)))))(((((...(((..(((((((.((.(((..((.......))..)))..-.))....))))))---)...)))...)))))..))).. ( -25.80)
>consensus
GCUGUGCGCCCUAAUUGGGCUAAUUACACUAAAAGCCAGCGGGUCUGGGGCAAUUUUC_AAUCAGUUUUCAUCAAGCUCGCUGCUAAGUAGCCUAAUUAUGAGCUG
(((....((((.....))))((((((..(((..(((.((((((..(((((.((((........)))).)).)))..)))))))))...)))..))))))..))).. (-21.26 = -22.57 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:11 2006