Locus 1247

Sequence ID X_DroMel_CAF1
Location 3,719,998 – 3,720,110
Length 112
Max. P 0.591777
window2007

overview

Window 7

Location 3,719,998 – 3,720,110
Length 112
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 82.21
Mean single sequence MFE -30.92
Consensus MFE -18.10
Energy contribution -19.44
Covariance contribution 1.34
Combinations/Pair 1.14
Mean z-score -1.94
Structure conservation index 0.59
SVM decision value 0.12
SVM RNA-class probability 0.591777
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3719998 112 + 22224390
UACUCA-------UUUUUCAAUUAGCUUGUUGAAAAUUACGGAGUAUCAGCGACUCCGAUUGGUCUACGGCUUUUAUGGAGCCCAAUCGAGUGGAUUGAGUGGAGAUCCGUCUGGAGAU
(((((.-------.((((((((......)))))))).....)))))((((((.(((((.(..(((((((((((.....)))))(....).))))))..).)))))...)).)))).... ( -36.30)
>DroSec_CAF1 11572 109 + 1
UACUCA-------UUUUUCAUUUGGCUUGUUGGAAAUUACGGAGUAUCAGCGACUACGAUUGGUCUACGCCUUUUAUGGAGACCAAUCGAGUGGAUUG---GAAGAUCUGUCUGGAGAU
..(((.-------.((((((..........))))))..(((((...(((((.(((.((((((((((...((......))))))))))))))).).)))---)....)))))...))).. ( -31.60)
>DroSim_CAF1 11597 109 + 1
UACUCA-------UUUUUCAAUUAGCUUGUUGGAAAUUACGGAGUAUCAGCGACUACGAUUGGUCUACGCUUUUUAUGGAGACCAAUCGAGUGGAUUG---GAAGAUCUGUCUGGAGAU
..(((.-------.((((((((......))))))))..(((((...(((((.(((.((((((((((.((.......)).))))))))))))).).)))---)....)))))...))).. ( -33.00)
>DroEre_CAF1 11669 103 + 1
UACUCA-------UUUUUCAAUUAGCCAGUUGGAAAUGACGGAGUAUCAGCGACUCCCAUUGGUCUACCCCUUUUAUGAAGCUCAAUCGAGUGUAC---------CUCCGUCUGGAGAU
..(((.-------.(((((((((....))))))))).((((((((((....((((......))))...............((((....))))))).---------)))))))..))).. ( -26.30)
>DroYak_CAF1 11304 109 + 1
CCCUCACUCAUUUUUUUUCAAUUAGCUUGUUGGAAAUUUCGGAGUAUCAGUGACUCCGAU-AGUCUACGCCCUUUAUGGAGCUCAAUCGAGUGUAC---------CUUCGUCUGAAGAU
....(((((.....((((((((......))))))))..(((((((.......))))))).-.......((((.....)).))......)))))...---------((((....)))).. ( -27.40)
>consensus
UACUCA_______UUUUUCAAUUAGCUUGUUGGAAAUUACGGAGUAUCAGCGACUCCGAUUGGUCUACGCCUUUUAUGGAGCCCAAUCGAGUGGAUUG___G_AGAUCCGUCUGGAGAU
(((((.........((((((((......)))))))).....)))))(((((.(((.(((((((.((.((.......)).)).))))))))))(((((.......)))))).)))).... (-18.10 = -19.44 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:57 2006