Locus 1243

Sequence ID X_DroMel_CAF1
Location 3,702,196 – 3,702,315
Length 119
Max. P 0.999297
window1998

overview

Window 8

Location 3,702,196 – 3,702,315
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.66
Mean single sequence MFE -35.03
Consensus MFE -22.84
Energy contribution -26.34
Covariance contribution 3.50
Combinations/Pair 1.08
Mean z-score -3.18
Structure conservation index 0.65
SVM decision value 3.49
SVM RNA-class probability 0.999297
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3702196 119 + 22224390
UACCUACACAUAUACUUGCCCAGGAAUCGUGCUAAAGCUUAGCGAUGCAGCGG-CACCACCGAAUGGGAUUGCAGUGAAGUCCAGCCGCUGCAACGCUUACGAACUGCACAGUGCCACCC
......(((.....(((....)))....((((........((((.((((((((-(..((.....))(((((.......))))).))))))))).))))........)))).)))...... ( -39.19)
>DroSec_CAF1 35719 119 + 1
UACCUACACAUAUACUUGCCCAGGAAUCGUGCUAAAGCUUACCGAUGCAGCGG-UACCACCGAAUGGGAUUACAGUAUAGUCCAGCCGCUGCAUCGCUUACAAACUGCACAGUGCCACCC
......(((.....(((....)))....((((..........(((((((((((-(..((.....))((((((.....)))))).))))))))))))..........)))).)))...... ( -36.05)
>DroEre_CAF1 40659 97 + 1
UACCUACACAUAUACUUGCCCAGGCAUUGUGCUAAUUCUUAGCGAG--------UAC---------------GAGUAAAAUCCAACCGCUACAUCGUUUACAAGCUGCACAGUGCCAGCC
......................((((((((((........((((((--------(((---------------(.((........)))).))).)))))........)))))))))).... ( -27.29)
>DroYak_CAF1 36299 120 + 1
UAUCUACACAUAUACUUGCCCAGAAAUUGUGCUUAUUCUUAGCGAUGCAGCGGUUACCACCGAUUGGGACCAUAGUAAAAUCCCACCGCUGCAUCGUUUACCAACUGCACAGUGCCACCC
......................(..(((((((........((((((((((((((...........((((...........))))))))))))))))))........)))))))..).... ( -37.59)
>consensus
UACCUACACAUAUACUUGCCCAGGAAUCGUGCUAAAGCUUAGCGAUGCAGCGG_UACCACCGAAUGGGAUUACAGUAAAAUCCAACCGCUGCAUCGCUUACAAACUGCACAGUGCCACCC
......................((.(((((((........(((((((((((((...........((......))...........)))))))))))))........))))))).)).... (-22.84 = -26.34 +   3.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:48 2006