| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,696,772 – 3,696,888 |
| Length | 116 |
| Max. P | 0.949980 |
| Location | 3,696,772 – 3,696,888 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 77.08 |
| Mean single sequence MFE | -34.50 |
| Consensus MFE | -17.00 |
| Energy contribution | -20.70 |
| Covariance contribution | 3.70 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.49 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.949980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3696772 116 - 22224390 ACAUUCAAGACAAGACA--UUCAUCACACUCAAGACUUGGCAAGUGCAACAUCGUAUGUUGCAGGUGCUCGGAUCCAAACUGGUGGAACCCACGCCACGAGUUUGGCUCUGAUUCGAU ..........((((...--................))))(((..((((((((...))))))))..)))(((((.(((((((.((((........)))).))))))).)))))...... ( -37.61) >DroSec_CAF1 30323 111 - 1 ACAUUCAA-----GACA--UUCAUCACACUCAAGACACGGCAAGUGCAACAUCGUAUGUUGCAGGUGCUCGGAGCCAAACUGGUGGAACCCACGCCACGAGUUUGGCUCUGAUUCGAU ........-----....--..................(((((..((((((((...))))))))..)))(((((((((((((.((((........)))).)))))))))))))..)).. ( -44.20) >DroSim_CAF1 33394 111 - 1 ACAUUCAA-----GACA--UUCAUCACACUCAAGACACGGCAAGUGCAACAUCGUAUGUUGCAGGUGCUCGGAGCCAAACUGGUGGAACCCACGCCACGAGUUUGGCUCUGAUUCGAU ........-----....--..................(((((..((((((((...))))))))..)))(((((((((((((.((((........)))).)))))))))))))..)).. ( -44.20) >DroEre_CAF1 35233 91 - 1 ACAGUCGA-----GACA--UUCAUCACACUCAAGACUCGGCAAGUGCAACAUCGAAUGUUGCAGGUGCUCGGAUGCAAACCGGUGGAACCCACGCCAC-------------------- ...(((((-----(...--................))))))...((((((((...))))))))(((((......))..)))((((.......))))..-------------------- ( -24.71) >DroYak_CAF1 30827 108 - 1 ACAUUCGA-----GACA--UUCAUCACACUCGAGACUCGGCAAGUGCAACAUCGUAUAAUGCAGGUGCUCGGAUCCAAACUGGUGGAACCCACGCCACGAGU---GCUUUGAUUCAAG ........-----((..--.(((...((((((.((..(((((..((((...........))))..))).))..)).....(((((.......))))))))))---)...))).))... ( -29.70) >DroAna_CAF1 32021 93 - 1 ---UUCAA-----AACAAGUGCAACACACUCU-----------CUGCCGGACCGGGUGUUGCAGGUGUUCCAA---AAAC---UGGAACCCACGCCACGAGUUUGCCUCCGAUUCGAU ---.....-----......((((((((....(-----------(.....))....))))))))((.((((((.---....---))))))))......((((((.......)))))).. ( -26.60) >consensus ACAUUCAA_____GACA__UUCAUCACACUCAAGACUCGGCAAGUGCAACAUCGUAUGUUGCAGGUGCUCGGAUCCAAACUGGUGGAACCCACGCCACGAGUUUGGCUCUGAUUCGAU .......................................(((..((((((((...))))))))..)))(((((.(.(((((.((((........)))).))))).).)))))...... (-17.00 = -20.70 + 3.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:46 2006