| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,690,540 – 3,690,632 |
| Length | 92 |
| Max. P | 0.736319 |
| Location | 3,690,540 – 3,690,632 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 76.51 |
| Mean single sequence MFE | -29.73 |
| Consensus MFE | -16.55 |
| Energy contribution | -16.92 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.736319 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3690540 92 - 22224390 CUAAGACCAAGCUUGGAG---UCUGUGGCCAUGGUUGUCUUUGGUGCGCAGAUUGCAGAUCUUGAGAU---UCAUGAGUCAUACUGUAAAAGCGGGAA .......((((.(((.((---((((((((((.((....)).)))).)))))))).)))..)))).(((---(....))))...((((....))))... ( -26.20) >DroPse_CAF1 28745 85 - 1 GUAGAACU-CGUUUGGAGUCGUCUGUGGCCAUGGUU-----UGG----CAGAU--CAGACUCCGACUCCAACUCUGACUCCAACUGUGACU-CAGAGC ........-...(((((((((((((..((((.....-----)))----)....--)))))...))))))))((((((.(((....).)).)-))))). ( -32.70) >DroSec_CAF1 24195 92 - 1 CCAAGACCAAGCUUGGAG---UCUGUGGCCAUGGUUGUCUUUGGGGCGCAGAUUGCAGAUCUUGAGAU---UCAUGAGUCAUCCUGUAAAAGCGGGAA .......((((.(((.((---((((((.((..((....))...)).)))))))).)))..)))).(((---(....)))).((((((....)))))). ( -31.00) >DroSim_CAF1 27250 92 - 1 CUAAGACCAAGCUUGGAG---UCUGUGGCCAUGGUUGUCUUUGGUGCGCAGAUUGCAGAUCUUGAGAU---UCAUGAGUCAUCCUGUAAAAGCGGGAA .......((((.(((.((---((((((((((.((....)).)))).)))))))).)))..)))).(((---(....)))).((((((....)))))). ( -30.70) >DroEre_CAF1 29113 91 - 1 CCAAGAGCAGUCUUGGAG---UCUGUGGCCAUGGUUGUCUUGGGUGCGCGGAUUGCAGAUCCUGGGUU---UUAUGAGUCAUUCUGCAAAA-CGGGAA ((((((.((..(.(((..---.......))).)..))))))))...(.((..(((((((...(((.((---....)).))).)))))))..-)).).. ( -29.30) >DroYak_CAF1 24580 92 - 1 CUAAGACCAGUCUUGGAG---UUUGUGGCCAUGGUCGUCUUUGGUGGGUGGAAUGCAGAUCCUGAGAC---UUAUGAGUCAUCCUGUAAAAGCGGGAA ....(((((((((..(..---(((((..((((..(((....)))...))))...)))))..)..))))---...)).))).((((((....)))))). ( -28.50) >consensus CUAAGACCAAGCUUGGAG___UCUGUGGCCAUGGUUGUCUUUGGUGCGCAGAUUGCAGAUCCUGAGAU___UCAUGAGUCAUCCUGUAAAAGCGGGAA (((((......))))).........(((((((((..((((..((...((.....))....))..))))...))))).))))(((((......))))). (-16.55 = -16.92 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:42 2006