Locus 122

Sequence ID X_DroMel_CAF1
Location 494,794 – 494,912
Length 118
Max. P 0.603539
window161

overview

Window 1

Location 494,794 – 494,912
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 84.18
Mean single sequence MFE -28.56
Consensus MFE -14.78
Energy contribution -14.74
Covariance contribution -0.04
Combinations/Pair 1.15
Mean z-score -2.55
Structure conservation index 0.52
SVM decision value 0.14
SVM RNA-class probability 0.603539
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 494794 118 + 22224390
AGCAUUUAUUCAAGCAACGCUUGAUUUUAGUGUUAACCAAUUCCUUUCAUUUGUGUUCAAAAUU-UUGACCGCCAAUGGGGUGAUUCAAAUAAUCCCCGAAUGAUUUUGGAAAAAAA-GA
((((((...((((((...))))))....))))))......((((..(((((((((.((((....-)))).))).....(((.((((.....)))))))))))))....)))).....-.. ( -28.80)
>DroSec_CAF1 7556 114 + 1
AGCAUUUUAUCAAGCAACGCUUGAUUUUAGUGUAAACCAAUUCCUUUCAUU-CUGUUCAAAAUU-UUGAU---CAAUGGGGCGAUUCAAAUAAUCCCCGAAUGAGUUUGGAAAAAAA-GA
.(((((..(((((((...)))))))...))))).......((((.((((((-(((.((((....-)))).---))...(((.((((.....))))))))))))))...)))).....-.. ( -30.90)
>DroSim_CAF1 8181 114 + 1
AGCAUUUUAUAUAGCAACGCUUGAUUUUAGUGUAAACCAAUUCCUUUCAUU-CUGUUCAAAAUU-UUGAU---CAAUGGGGCGAUUCAAAUAAUCCCCGAAUGAGUUUGGAAAAAAA-GA
.((..........)).(((((.......))))).......((((.((((((-(((.((((....-)))).---))...(((.((((.....))))))))))))))...)))).....-.. ( -23.70)
>DroEre_CAF1 8463 118 + 1
AGCAUUCAUUCAAGCAACGCUUGAUUUUAGUGUAACCCAAUUCCGUUCAUU-CUGUUCAAAAUU-GUGACCGCUAAUGGGACAUUUCAUAUCAUCCUUGAAUGUCUUUGGAAACAAGGGA
.(((((((.((((((...))))))....(((((..((((.(..((.((((.-............-)))).))..).)))))))))............)))))))(((((....))))).. ( -29.12)
>DroYak_CAF1 7977 119 + 1
AGCAUUCAUUCAAGAUACGCUUGAUUUUAGUGUAAACCAAUUCCUUUCGUU-CAGUUGAAAAUUUUUUACUGCUAAUGGGACGAUUCACAUCAUUCUUGAAUGUCUUUGGAAACAAAGGA
......(((((((((((((((.......)))))).......((.(..((((-((((.(((....))).))))..))))..).))..........)))))))))((((((....)))))). ( -30.30)
>consensus
AGCAUUUAUUCAAGCAACGCUUGAUUUUAGUGUAAACCAAUUCCUUUCAUU_CUGUUCAAAAUU_UUGAC_GCCAAUGGGGCGAUUCAAAUAAUCCCCGAAUGACUUUGGAAAAAAA_GA
.(((((...((((((...))))))....)))))...((((.....(((........((((.....))))........((((.............))))))).....)))).......... (-14.78 = -14.74 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:49 2006