| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,588,322 – 3,588,414 |
| Length | 92 |
| Max. P | 0.952743 |
| Location | 3,588,322 – 3,588,414 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 87.46 |
| Mean single sequence MFE | -20.31 |
| Consensus MFE | -15.16 |
| Energy contribution | -15.76 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.952743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3588322 92 + 22224390 UUCAUCAUUUACCAUAUUUAAUUCCAUUUAAAUGAAAAUGAACUCAAACCGAUUACCCCGGUAAGAGGAACAGUGGGCAUAGCCCCC------CUCCC-------- (((.((((((....(((((((......))))))).)))))).(((..((((.......))))..))))))....((((...))))..------.....-------- ( -18.40) >DroSec_CAF1 47295 98 + 1 UUCAUCAUUUACCAUAUUUAAUUCCAUUUAAAUGAAAAUGAACUCAAACCGAUUACCCCGGUAAGAGGUACAGUGGGCAUAGCCGCC------CUCCCCAC--UGC ....((((((....(((((((......))))))).))))))......(((..((((....))))..))).(((((((..........------...)))))--)). ( -22.92) >DroSim_CAF1 34123 98 + 1 UUCAUCAUUUACCAUAUUUAAUUCCAUUUAAAUGAAAAGGAACUCAAACCGAUUACCCCGGUAAGAGGUACAGAGGGCAUAGCCCCC------CUCCCCAC--UGC ....(((((((.................)))))))...((.......(((..((((....))))..)))...(((((........))------))).))..--... ( -19.53) >DroEre_CAF1 42180 106 + 1 UUCAUCAUUUACCAUAUUUAAUUCCAUUUAAAUGAAAAUGAACUCAAACCGAUUACCCCGGUGAGAGGUACAGUGGGCAUAGCCCCCUCCAACCACCCCACCCCGC ....((((((....(((((((......))))))).)))))).(((..((((.......))))))).(((..((.((((...)))).))...)))............ ( -21.00) >DroYak_CAF1 43053 89 + 1 UUCAUCAUUUACCAUAUUUAAUUCCAUUUAAAUGAAAAUGAACUCAAACCGAUUACCCCGGUUAGAGGAACAGUGGGCAUAGCCAC---------------CC--C (((.((((((....(((((((......))))))).)))))).(((.(((((.......))))).))))))..((((......))))---------------..--. ( -19.70) >consensus UUCAUCAUUUACCAUAUUUAAUUCCAUUUAAAUGAAAAUGAACUCAAACCGAUUACCCCGGUAAGAGGUACAGUGGGCAUAGCCCCC______CUCCCCAC___GC ....((((((....(((((((......))))))).)))))).(((..((((.......))))..))).......((((...))))..................... (-15.16 = -15.76 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:58 2006