Locus 1204

Sequence ID X_DroMel_CAF1
Location 3,584,335 – 3,584,455
Length 120
Max. P 0.942414
window1936

overview

Window 6

Location 3,584,335 – 3,584,455
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.08
Mean single sequence MFE -30.64
Consensus MFE -25.07
Energy contribution -26.00
Covariance contribution 0.93
Combinations/Pair 1.10
Mean z-score -1.93
Structure conservation index 0.82
SVM decision value 1.33
SVM RNA-class probability 0.942414
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3584335 120 - 22224390
GCGGUGAACUCUUUGUGCCCAGAUUUACAGGCACGUCUCAUCGCUAUCGUAUCUUUCUGUGGUCCUUUCAUUGGAAAGUGCCAAGUGCCUGUCUCUAUCUGCAACUGCAAUUUUCCUCCC
(((((..((.....))...(((((..((((((((........((....)).........(((..(((((....)))))..))).))))))))....)))))..)))))............ ( -33.90)
>DroSec_CAF1 43205 120 - 1
GCGGUGAACUCUUUGUGCCCAGAUUUACAGGCACGUCUCAUCGCUAUCCUAUCUUUCCGUGGUCCUUUCAUUGGAAAGUGCCAAGUGCCUGUCUCUAUCUGCAACUGCAGUUUUCCUCCC
..((.((((((...((...(((((..((((((((((......))...............(((..(((((....)))))..))).))))))))....)))))..)).).))))).)).... ( -35.10)
>DroSim_CAF1 29991 120 - 1
GCGGUGAACUCUUUGUGCCCAGAUUUACAGGCACGUCUCAUCGCUAUCCUAUCUUUCCGUGGUCCUUUCAUUGGAAAGUGCCAAGUGCCUGUCUCUAUCUGCAACUGCAGUUUUCCUCCC
..((.((((((...((...(((((..((((((((((......))...............(((..(((((....)))))..))).))))))))....)))))..)).).))))).)).... ( -35.10)
>DroEre_CAF1 37996 105 - 1
G--------------UGCCCAGAUUUACAGGCAUGUCUCUUCGCUAUCCCAUCUUUCCGUGCUCCUUUCAUAGGAAAGUGCCAAGUGUCUGUCUCUAUCUGCAACUGCAGU-UUCCUCCC
.--------------(((.(((((..((((((((((......)).....((.(((((((((.......))).))))))))....))))))))....))))).....)))..-........ ( -20.70)
>DroYak_CAF1 39022 119 - 1
GUGGUGAACUCUUUGUGCCCAGAUUUACAGGCAUGUCUUUUCGCUAUCCCAUCUUUCCGUGCUCCUUUCAUAGGAAAGUGCCAAGUGCCUGUUUCUAUCUGCAACUGCAGU-UUCCUCCC
..((.((((((...((...(((((..((((((((((......)).....((.(((((((((.......))).))))))))....))))))))....)))))..)).).)))-)))).... ( -28.40)
>consensus
GCGGUGAACUCUUUGUGCCCAGAUUUACAGGCACGUCUCAUCGCUAUCCUAUCUUUCCGUGGUCCUUUCAUUGGAAAGUGCCAAGUGCCUGUCUCUAUCUGCAACUGCAGUUUUCCUCCC
(((((..((.....))...(((((..((((((((((......))...............((((.(((((....))))).)))).))))))))....)))))..)))))............ (-25.07 = -26.00 +   0.93)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:51 2006