Locus 1193

Sequence ID X_DroMel_CAF1
Location 3,557,571 – 3,557,661
Length 90
Max. P 0.904901
window1914

overview

Window 4

Location 3,557,571 – 3,557,661
Length 90
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 94.43
Mean single sequence MFE -17.86
Consensus MFE -15.86
Energy contribution -16.06
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.89
SVM decision value 1.04
SVM RNA-class probability 0.904901
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3557571 90 + 22224390
AAUCAAUUUUUUACUCGAGAGAG-CGCAAAAAUAGAAGGCUUAAAAUUGGACGGCGAA-AAACUUCCCACACCCAGGCUGAGUCAAUUGAAU
..((((((.....(((....)))-.............((((((...((((..((.(((-....)))))....))))..)))))))))))).. ( -19.00)
>DroSec_CAF1 13188 88 + 1
AAUCAAUUUUUUACUCGAGAGAG-CGCAA--AUAAAAGGCUUAAAAUUGGACGGCGAA-AAACUUCCCACACCCAUGCUGAGUCAAUUGAAU
..((((((.....(((....)))-.....--......((((((..((.((..((.(((-....)))))...)).))..)))))))))))).. ( -18.00)
>DroSim_CAF1 11263 88 + 1
AAUCAAUUUUUUACUCGAGAGAG-CGCAA--AUAAAAGGCUUAAAAUUGGACGGCGAA-AAACUUCCCACACCCAUGCUGAGUCAAUUGAAU
..((((((.....(((....)))-.....--......((((((..((.((..((.(((-....)))))...)).))..)))))))))))).. ( -18.00)
>DroEre_CAF1 13357 89 + 1
AAUCAAUU-UUUACUCGCGAGAGCCGCAA--AUAAAAGGCUUAAAAUUGGACGGAGAAAAAACUUCCCACACCCAUGCUGAGUCAAUUGAAU
..((((((-...(((((((.(((((....--......))))).....(((..((.(((.....)))))....)))))).)))).)))))).. ( -20.00)
>DroYak_CAF1 14762 88 + 1
AAUCAAUU-UUUACUCGAGAGAG-CGCAA--GUAAAAGGCUUAAAAUUGAACGGAGAAAAAACUUCCCACACCCAUGCUGAGUCAAUUGAAU
..((((((-....(((....)))-.....--......((((((..((.(...((.(((.....)))))....).))..)))))))))))).. ( -14.30)
>consensus
AAUCAAUUUUUUACUCGAGAGAG_CGCAA__AUAAAAGGCUUAAAAUUGGACGGCGAA_AAACUUCCCACACCCAUGCUGAGUCAAUUGAAU
..((((((.....(((....)))..............((((((....(((..((.(((.....)))))....)))...)))))))))))).. (-15.86 = -16.06 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:31 2006