Locus 118

Sequence ID X_DroMel_CAF1
Location 478,292 – 478,394
Length 102
Max. P 0.500000
window155

overview

Window 5

Location 478,292 – 478,394
Length 102
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 84.94
Mean single sequence MFE -35.10
Consensus MFE -21.29
Energy contribution -23.35
Covariance contribution 2.06
Combinations/Pair 1.15
Mean z-score -1.83
Structure conservation index 0.61
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 478292 102 + 22224390
AAAGCGCGAGCGACUUGAAUUCCCGCUGACCGCCUCAGACGGUAGCCGAAUUUGGCGGCAAGCUAGCCAAGGUGGCAGCACUGAAAUGGUCACAGAAC----GAAA
...((....))((((....(((..((((.((((((.........((((....))))(((......))).))))))))))...)))..)))).......----.... ( -35.00)
>DroSec_CAF1 9915 102 + 1
AAAGCGGGAGCGACUUGAAUUCCCGCUGACCGCCUCAGACGCUAACCGAAUUUGGCGGCAAGCUAGCCAAGGUGGCAGCACUGAGAUGGACAGAGAAC----GAAA
..((((((((.........))))))))..(((.(((((.((((((......))))))....(((.(((.....)))))).))))).))).........----.... ( -37.60)
>DroSim_CAF1 10336 102 + 1
AAAGAGGGAGCGACUUGGAUUCCCGCUGACCGCCCCAGACGCUAACCGAAUUUGGCGGCAAGCUAGCCAAGGUGGCAGCACUGAGAUGGACAGAGAAC----GAAA
.....((((((......).)))))((((.(((((......(((((......)))))(((......)))..))))))))).(((.......))).....----.... ( -32.50)
>DroEre_CAF1 10290 106 + 1
AAAGCGCGAGCGACACGGACUCCUGCCGACAGCGUCGGACAGUAUCCGAAUCUGGCGGGAAACUAGCCACAGUGGCAGCACUGAAGUGGACACAGAACAGAAGAUA
...((....))....((((...((((((((...))))).)))..)))).(((((((((....)).))).(((((....)))))..................)))). ( -35.30)
>consensus
AAAGCGCGAGCGACUUGAAUUCCCGCUGACCGCCUCAGACGCUAACCGAAUUUGGCGGCAAGCUAGCCAAGGUGGCAGCACUGAAAUGGACACAGAAC____GAAA
..((((((((.........))))))))..(((.(((((......((((.......))))..(((.(((.....)))))).))))).)))................. (-21.29 = -23.35 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:43 2006