Locus 1172

Sequence ID X_DroMel_CAF1
Location 3,491,805 – 3,491,896
Length 91
Max. P 0.657636
window1879

overview

Window 9

Location 3,491,805 – 3,491,896
Length 91
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 78.55
Mean single sequence MFE -19.68
Consensus MFE -12.46
Energy contribution -12.10
Covariance contribution -0.36
Combinations/Pair 1.31
Mean z-score -1.47
Structure conservation index 0.63
SVM decision value 0.26
SVM RNA-class probability 0.657636
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3491805 91 + 22224390
AUAAAAACAUAAAAUCGCUUGCAAGAGCCGCGCGUUCAUGCGGAAGCUAAUUGAUUUUUUAUAUCCCCAUUAAG---GGAAUGGGCGAAUAACG--
................((((....))))(((.((((((.((....))....))).........((((......)---)))))).))).......-- ( -20.50)
>DroPse_CAF1 536 85 + 1
-AAAAGCCAUAAAAAUGCCUGCAAAAGUUGCGCAUUCGAGCGAAAGCUAAUUGAUUUUUUAUAUC-CUGC-------AGAGUGUGCAAACACCA--
-...((.(((....))).)).......((((((((((.(((....)))....(((.......)))-....-------.))))))))))......-- ( -19.80)
>DroSim_CAF1 625 90 + 1
AUAAAAACAUAAAAUCGCUUGCAAGAGCCGCGCGUUCACGCGGAAGCUAAUUGAUUUUUUAUAUC-CCAUUAAG---GGAAUGGGCGAAUAACG--
..............((((((...((..(((((......)))))...))...............((-((.....)---)))..))))))......-- ( -22.40)
>DroEre_CAF1 824 90 + 1
AUAAAAACAUAAAAUCGCUUGCAAGAGCCGCGCGUUCAGGCGGAAGCUAAUUGAUUUUUUAUAUC-CCAUUAAG---GGAAUGGGCGAAUAACG--
................((((....))))(((.(((((.(((....))).................-((.....)---)))))).))).......-- ( -21.60)
>DroAna_CAF1 2746 95 + 1
AUAAAAACAUAAAAACGACUGCAAGAGCUGAGCAUUCAAGCGGAAGCUAAUUGAUUUUUUAUAUC-CCAUUACGGAAGGAAAAAGCGCACAACAUC
...................(((...((((..((......))...))))......((((((...((-(......)))..))))))..)))....... ( -14.00)
>DroPer_CAF1 547 85 + 1
-AAAAGCCAUAAAAAUGCCUGCAAAAGUUGCGCAUUCGAGCGAAAGCUAAUUGAUUUUUUAUAUC-CUGC-------AGAGUGUGCAAACACCA--
-...((.(((....))).)).......((((((((((.(((....)))....(((.......)))-....-------.))))))))))......-- ( -19.80)
>consensus
AUAAAAACAUAAAAACGCCUGCAAGAGCCGCGCAUUCAAGCGGAAGCUAAUUGAUUUUUUAUAUC_CCAUUAAG___GGAAUGGGCGAACAACA__
............................(((.(((((..((....)).....(((.......))).............))))).)))......... (-12.46 = -12.10 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:00 2006