Locus 1169

Sequence ID X_DroMel_CAF1
Location 3,485,565 – 3,485,673
Length 108
Max. P 0.599289
window1875

overview

Window 5

Location 3,485,565 – 3,485,673
Length 108
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 90.52
Mean single sequence MFE -33.58
Consensus MFE -26.42
Energy contribution -27.93
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.79
SVM decision value 0.13
SVM RNA-class probability 0.599289
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3485565 108 - 22224390
ACCAAAAGCACACUUACUCUCAUGUGAGAGCAGGGGGCAAAAAUGGUGGA-AAAGCGCUUGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUC-------GAGUGGACGAGUCCAUU
((((...((...(((.(((((....))))).)))..)).....))))...-....(((((....)))))(((.(.(.(.....).).).)))-------.((((((....)))))) ( -32.50)
>DroSec_CAF1 46233 115 - 1
ACCAAAAGCACACUUACUCUCAUGUGAGAGCAUGGGGCAAA-AUGGUGGGAAAAGCGCUUGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUCGGUGGUUGAGUGGACGAGUCCAUU
..(((..((.((((...((((((((....))))))))....-..)))).......(((((....)))))(((.(.(.(.....).).).))).))..)))((((((....)))))) ( -35.90)
>DroSim_CAF1 40669 113 - 1
ACCAAAAGCACACUUACUCUCAUGUGAGAGCAUGGGGCAAA-AUGGUGGGAAAU--GGUGGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUCGGUGGUUGAGUGGACGAGUCCAUU
((((....(.((((...((((((((....))))))))....-..)))).)...)--)))...((..((.(((.(.(.(.....).).).))).))..)).((((((....)))))) ( -31.70)
>DroEre_CAF1 49243 108 - 1
ACCAAAAGCACACUCACUCUCAUGUGAGAGCAUGGGGCGAA-AUCGUGGGAAAAGCGGUUGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUC-------GAGUGGACGAGUCCAUU
.((((..((...(((((((((((((....)))))))).(..-..))))))....))..))))......((((..((......)).....(((-------.....)))..))))... ( -34.20)
>consensus
ACCAAAAGCACACUUACUCUCAUGUGAGAGCAUGGGGCAAA_AUGGUGGGAAAAGCGCUUGGAAAAGCGGACGGGCGGAAAAGCGGGUGGUC_______GAGUGGACGAGUCCAUU
((((...((.((((...((((((((....)))))))).......)))).......((((((..........)))))).....))...)))).........((((((....)))))) (-26.42 = -27.93 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:56 2006