Locus 1159

Sequence ID X_DroMel_CAF1
Location 3,452,010 – 3,452,109
Length 99
Max. P 0.954356
window1862

overview

Window 2

Location 3,452,010 – 3,452,109
Length 99
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 91.01
Mean single sequence MFE -24.50
Consensus MFE -19.10
Energy contribution -19.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.30
Structure conservation index 0.78
SVM decision value 1.44
SVM RNA-class probability 0.954356
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3452010 99 - 22224390
AACAAACAAGUCAAUUGGCUGGAAAGCUGAUGAAAAAUAGCGCCAUUCCGCUGGCA--AAGUUAAGUCAACGCAUGUGAAUUGCGUCAUAAGCUAAAGUAA
..........(((.(..(((....)))..))))....((((((((......)))).--...........(((((.......))))).....))))...... ( -24.20)
>DroSec_CAF1 24099 93 - 1
----AACAAGUCAAUUGGCUGGAAAGCUGAUGAAAAAUAGCGCCAUUCCGCUGGCA--AAGUU--GCCAACGCAUGUGAAUUGCGUCAUAAGCUAAAGUAA
----......(((.(..(((....)))..))))....((((((......))(((((--....)--))))(((((.......))))).....))))...... ( -24.50)
>DroSim_CAF1 23799 87 - 1
----AACAAGUCAAUUGGCUGGAAAGCUGAUGAAAAAUAGCGCCAUUCCGCUGGCA--AAGUU--GUCAACGCAUGUGAAUUGCGUCAUAA------GUAA
----.((((.(((.(..(((....)))..))))........((((......)))).--...))--))..(((((.......))))).....------.... ( -20.50)
>DroEre_CAF1 27363 95 - 1
----AACAAGUCAAUUGGCUGGAAAGCUGAUGAAAAAUAGCGCCAUUUCGCUGGCAAAAAGUU--GCCAACGCAUGUGAAUUGCGUCAUAAGCUAACGUAA
----.((...(((.(..(((....)))..))))....((((((......))((((((....))--))))(((((.......))))).....))))..)).. ( -25.50)
>DroYak_CAF1 25417 94 - 1
----AACAAGUCAAUUGGCUGGAAAGCUGAUGAAAAAUAGCGGUAUUCCGCUGG-AAAAAGUU--GGCAACGCAUGUGAAUUGCGUCAUAAGCUAAAGUAA
----..........((((((.((..((..((......((((((....)))))).-.....)).--.))..((((.......))))))...))))))..... ( -27.80)
>consensus
____AACAAGUCAAUUGGCUGGAAAGCUGAUGAAAAAUAGCGCCAUUCCGCUGGCA__AAGUU__GCCAACGCAUGUGAAUUGCGUCAUAAGCUAAAGUAA
....(((...(((.(..(((....)))..))))....(((((......))))).......)))......(((((.......)))))............... (-19.10 = -19.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:45 2006