Locus 1152

Sequence ID X_DroMel_CAF1
Location 3,442,890 – 3,443,001
Length 111
Max. P 0.688791
window1851

overview

Window 1

Location 3,442,890 – 3,443,001
Length 111
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 76.87
Mean single sequence MFE -19.74
Consensus MFE -8.00
Energy contribution -9.84
Covariance contribution 1.84
Combinations/Pair 1.13
Mean z-score -1.93
Structure conservation index 0.41
SVM decision value 0.32
SVM RNA-class probability 0.688791
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3442890 111 + 22224390
UGGAUCAUAAAUUAUCCAUACCAAAAAAAAAAAAAAAAUAGAAACGAACCGAAAUGCUGCAGUCAGCAAAAGUAUACAUA------UUUAUUUAUGUUUUUUGUUUUUCGGAUUUUC
(((((........)))))..............................(((((((((((....)))))((((...(((((------......))))).))))...))))))...... ( -18.40)
>DroSec_CAF1 15180 98 + 1
UGGAUCAUAAAUUAUCCAUACCGAA----------AAAUAGAUGCGAACCGAAAUGCUGCAGUAAGCAAAAGUAUACAUG------UUUAUAUAUGUUUUU---UUUCGGGUUUUUC
(((((........)))))..(((((----------(((................((((......)))).......(((((------(....))))))..))---))))))....... ( -19.60)
>DroSim_CAF1 14924 98 + 1
UGGAUCAUAAAUUAUCCAUACCGAA----------AAAUAGAUGCGAACCGAAAUGCUGCAGUAAGCAAAAGUAUACAUA------UUUAUAUAUGUUUUU---UUUUCGGUUUUUC
(((((........))))).......----------..........(((((((((((((......)))).......(((((------(....))))))....---.)))))))))... ( -20.30)
>DroEre_CAF1 17641 103 + 1
UGGAUCAUAAAUUAUCCGCACAAAA-------AUAAAAUAGAAGCGAACCAAAAUGCUGCAGUCAGCAACUGUAUAUAUAUAUGUAUUUA--CAAAUAUA-----UAUUCGUUUUAG
.((((........))))........-------........((((((((......(((((....)))))......(((((((.(((....)--)).)))))-----)))))))))).. ( -20.40)
>DroYak_CAF1 16342 105 + 1
UGGAUCAUAAAUUAUCCAUACAAAA---------AAAAUAGAAACGACCCGAAAUGCUGCAGUCAGCAAAAGUAUAUAUACCCGUAUUUAUACAAAUGUAU---CUAUGCGUUUUUC
(((((........)))))...((((---------(..(((((.(((........(((((....)))))...(((((.(((....))).)))))...))).)---))))...))))). ( -20.00)
>consensus
UGGAUCAUAAAUUAUCCAUACCAAA_________AAAAUAGAAGCGAACCGAAAUGCUGCAGUCAGCAAAAGUAUACAUA______UUUAUAUAUGUUUUU___UUUUCGGUUUUUC
(((((........)))))...........................(((((((((((((......))))...(((((............)))))............)))))))))... ( -8.00 =  -9.84 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:35 2006