| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,440,024 – 3,440,120 |
| Length | 96 |
| Max. P | 0.881589 |
| Location | 3,440,024 – 3,440,120 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 72.67 |
| Mean single sequence MFE | -17.90 |
| Consensus MFE | -2.52 |
| Energy contribution | -4.00 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.14 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.881589 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3440024 96 + 22224390 ACA--------------AAGGACAUUGUGCCAUCCUAUGGAGGAUAUUUUUUCACCUCUUACCUACUCAAUAUGCC-CCUUUUCGCAAACCAAGUCUGUCAUUUCACCACA ...--------------..((((((((...........(((((...........)))))........)))).(((.-.......)))......)))).............. ( -10.91) >DroSec_CAF1 12452 95 + 1 ACA--------------AAGGACAGUU-GGCACCCUAUGAAGGACAUUUGCUCACCUCUUCCCUACUUAAUAUGCC-CCUCUUCGCACCCCCAGCCUGUCCUUUCCCCGCC ..(--------------((((((((((-((...(((....))).............................(((.-.......)))...)))).)))))))))....... ( -19.50) >DroSim_CAF1 12318 96 + 1 ACA--------------AAGGACAGUUUGCCACCCUAGGGAGGACAUUUUCUCACCUCUUCCCUACUUAAUAUGCC-CCUUUUCGCACCCCCAGCCUGUCCUUUCCCCGCC ..(--------------((((((((.(((......(((((((((............))))))))).......(((.-.......)))....))).)))))))))....... ( -25.80) >DroEre_CAF1 14758 107 + 1 ACAAUUGCGAAUAGACGAAGGACUGUGUGCCACCCUGUC----CCAUUUUCUCACCUCUUUGCUACUUAAUAUGCCCCCUUUUUGCGCCCCAAGGCUGACUUUUCCCCUCU ......(((((.((.....((((.(((...)))...)))----).................((..........))...)).)))))(((....)))............... ( -14.90) >DroYak_CAF1 13551 106 + 1 ACAAUUGCUCUCAGGCGAAGGACAGUGUGCCACUCAGUC----C-UUUUCCUCACCUCUUUCCUACUUAAUAUGCCUCCUUUUUGCACCCCAGGCCUGUAUUUUCCCCUCC ...........((((((((((((((((...))))..)))----)-)))........................(((.........)))......)))))............. ( -18.40) >consensus ACA______________AAGGACAGUGUGCCACCCUAUG_AGGACAUUUUCUCACCUCUUCCCUACUUAAUAUGCC_CCUUUUCGCACCCCAAGCCUGUCCUUUCCCCGCC .................((((((((........((......)).............................(((.........)))........))))))))........ ( -2.52 = -4.00 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:34 2006