Locus 1145

Sequence ID X_DroMel_CAF1
Location 3,429,339 – 3,429,444
Length 105
Max. P 0.629796
window1844

overview

Window 4

Location 3,429,339 – 3,429,444
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 80.32
Mean single sequence MFE -30.82
Consensus MFE -18.17
Energy contribution -19.07
Covariance contribution 0.89
Combinations/Pair 1.33
Mean z-score -1.81
Structure conservation index 0.59
SVM decision value 0.20
SVM RNA-class probability 0.629796
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3429339 105 - 22224390
AAUAUGCCAGCUGGCGAGGUGAUGAAUACACUCGAGGUGAUAUUCAAGAAUCUGCUAAAACGAAAGGCAAUCGACGGCACCGAAAAGCAGGGUCUCAAAAUCAAA
.....(((....)))((..((((((((((((.....))).)))))).((..(((((....(....)........((....))...)))))..)))))...))... ( -27.10)
>DroSec_CAF1 1677 105 - 1
AAUAUGCCAGCUGGCGAGGUGAUGAAUACACUCGAGGUGAUAUUCAAGAACCUGCUAAAGCGAAAGGCAAUCGCCGGCACCGAAAGGCAGGGCCUCAAAAUCCAG
.....(((.(((((((((((..(((((((((.....))).))))))...)))((((.........)))).)))))))).((....))...)))............ ( -37.80)
>DroSim_CAF1 589 105 - 1
AAUAUGCCAGCUGGCGAGGUGAUGAAUACACUCGAGGUGAUAUUCAAGAACCUGCUGAAGCGAAAGGCAAUCGCCGGCACCGAUAGGCAGGGCCUCAAAAUCCAG
.....(((....)))(((((..(((((((((.....))).))))))....((((((....((...(((....))).....))...)))))))))))......... ( -36.60)
>DroEre_CAF1 1699 105 - 1
CAUAUGCCAGCUGGCGAGGUGAUGAAUACACUCGAGGUGAUAUUCAAGGUCCUGCUGAAGCGCCAGGUCAUCGAAGGCAAUGAGAGGCAGGUGCUCAAAAUCCAG
(((.((((..(((((.(((...(((((((((.....))).))))))....)))((....)))))))(((......))).......)))).)))............ ( -31.10)
>DroYak_CAF1 1699 105 - 1
AAUAUGCCAGCUAGCGAGGUAAUGAAUACACUCGAGGUGAUAUUCAAGAACCUGCUCAAGCGAAAGGCCAUCGAAGCCAAUGAGAAGCAGGGGCUCAAAAUUCAG
.....(((.((((((.((((..(((((((((.....))).))))))...)))))))..)))....)))....((.(((..((.....))..)))))......... ( -28.80)
>DroAna_CAF1 2639 105 - 1
AAUGUGCAAGUAGGGGACGUGAUGAAUGUCCUGGAAGUGAUAUUCAAAAAUCUAAUCAAGCGGAAAUCUUUGGAUGGAGCCGAGAAGACCCCCGCCAAAAUCCGG
.........(..((((......(((((((((.....).))))))))....(((..((...(((...(((......))).))).)))))))))..).......... ( -23.50)
>consensus
AAUAUGCCAGCUGGCGAGGUGAUGAAUACACUCGAGGUGAUAUUCAAGAACCUGCUAAAGCGAAAGGCAAUCGACGGCACCGAGAAGCAGGGCCUCAAAAUCCAG
.....(((....)))(((((..(((((((((.....))).))))))....((((((....((....((........))..))...)))))))))))......... (-18.17 = -19.07 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:29 2006