Locus 1133

Sequence ID X_DroMel_CAF1
Location 3,360,307 – 3,360,397
Length 90
Max. P 0.996697
window1820

overview

Window 0

Location 3,360,307 – 3,360,397
Length 90
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 74.15
Mean single sequence MFE -18.55
Consensus MFE -13.80
Energy contribution -14.93
Covariance contribution 1.12
Combinations/Pair 1.18
Mean z-score -2.20
Structure conservation index 0.74
SVM decision value 2.73
SVM RNA-class probability 0.996697
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3360307 90 - 22224390
AACGUUGGUAUGGC-GCAUUCAUUUCAAAGCAACUUUAGUAGU-----CGUUCUGUCUAUAUAAGAACAUAUGUAGGGAGAACCUAAGUUAGUAUA
....((((.((((.-....)))).))))....(((....(((.-----.(((((.((((((((......)))))))).))))))))....)))... ( -18.70)
>DroSec_CAF1 6767 92 - 1
AACGCUGGUAUUACAGCAUUCAUUUCAAAACAAAUAUACUAGUUAAAUAGUUCUGCCUAUAUAAGUACAUAUAUAGGGAGAACUUAU--U--GAUA
...((((......))))........................(((((..((((((.((((((((......)))))))).))))))..)--)--))). ( -25.90)
>DroSim_CAF1 6797 92 - 1
AACGCUUGUAUUACAGCAUUCAUUUCAAAACAAAUAUACUAGUUAAAUAGUUCUGCCUAUAUAAGUACAUAGAUAGGGAGAACCUAU--U--GAUA
...(((.(.....))))........................(((((...(((((.(((((.((......)).))))).)))))...)--)--))). ( -15.40)
>DroYak_CAF1 6961 79 - 1
AACGUUCGUGCUAC-GCAUUCAUUUCGAUACAGCU----------AAUAGUACUGCCUAUAUAAAUAAAUAUAUAUGGAGAACUUAC--U----AA
...((((((((((.-((..((.....))....)).----------..))))))...(((((((........))))))).))))....--.----.. ( -14.20)
>consensus
AACGCUGGUAUUAC_GCAUUCAUUUCAAAACAAAUAUACUAGU__AAUAGUUCUGCCUAUAUAAGUACAUAUAUAGGGAGAACCUAU__U__GAUA
...((((......))))................................(((((.((((((((......)))))))).)))))............. (-13.80 = -14.93 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:07 2006