Locus 1124

Sequence ID X_DroMel_CAF1
Location 3,331,736 – 3,331,831
Length 95
Max. P 0.762272
window1810

overview

Window 0

Location 3,331,736 – 3,331,831
Length 95
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 71.81
Mean single sequence MFE -25.92
Consensus MFE -11.63
Energy contribution -12.27
Covariance contribution 0.64
Combinations/Pair 1.16
Mean z-score -1.82
Structure conservation index 0.45
SVM decision value 0.51
SVM RNA-class probability 0.762272
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3331736 95 - 22224390
AGC-CGGAGCGACGAAGUCGCUU-GAUGGAAAGUUGUUGUUUAUGCUUAAGU---UGUACAUAUGUACAUAUUUCUAAGGCGGAAAUUUCUGGGCGACAA----
..(-(((((((((...)))))))-..)))....(((((((((..((((.((.---(((((....))))).....)).))))(((....))))))))))))---- ( -25.80)
>DroSec_CAF1 9418 88 - 1
AGCUCGGAGCGACGGAGUCGCUU-CGUGGAAAGUUGUUGCUUAUGCUUAAAU---UGUG--------CAUAUUUCUUAGGCGGAAAUUUCUUGGCGACAA----
..(.(((((((((...)))))))-)).).....(((((((((((((......---...)--------))))(((((.....)))))......))))))))---- ( -27.10)
>DroSim_CAF1 11226 87 - 1
AGC-CGGAGCGACGGAGUCGCUU-CGUGGAAAGUUGUUGCUUAUGCUUAAAU---UGUG--------CAUAUUUCUUAGGCGGAAAUUUCUUGGCGACAA----
.((-(((((((((...)))))))-)..(((((....((((((((((......---...)--------)))).......)))))...))))).))).....---- ( -26.81)
>DroEre_CAF1 9755 95 - 1
AGC------CAACGGAGCCGCUG-GCAGGAAAGUUGUUAUUUGUGUGUACGACUACAUACAUAUUUAUGUAUUUUUUAGGCGGAAAUUUCUUGGCGACAU--CA
.((------(((..((.(((((.-...(((((((...((..((((((((....))))))))....))...))))))).)))))...))..))))).....--.. ( -27.40)
>DroYak_CAF1 9802 84 - 1
AGC------CAACUGAGCCGCUCUGAAGGAAAGUUGUUGUUUGUGUUU------AUAUACAU--------AUUUUUUAGGCGGAAAUUUCUUGGCGACAUCUCA
.((------(((..((.((((.((((((((...........(((((..------....))))--------)))))))))))))...))..)))))......... ( -22.50)
>consensus
AGC_CGGAGCGACGGAGUCGCUU_GAUGGAAAGUUGUUGUUUAUGCUUAAAU___UGUACAU_____CAUAUUUCUUAGGCGGAAAUUUCUUGGCGACAA____
................((((((....((((((....(((((((.................................)))))))...))))))))))))...... (-11.63 = -12.27 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:58 2006