| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 462,543 – 462,662 |
| Length | 119 |
| Max. P | 0.500000 |
| Location | 462,543 – 462,662 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.52 |
| Mean single sequence MFE | -32.80 |
| Consensus MFE | -23.35 |
| Energy contribution | -22.25 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 462543 119 - 22224390 CUGCGGUACCCGCACUUCGAUACAAAACGUAAAUUGGUAAUGUUGCUAUG-UUGAAAAAGAGUUGAGGUCGCCAUUAUGGGGGGUCUUAUCUCUUUUCUACCGGAUCAUGAGUUUGUUCA .(((((...)))))....((.(((((.(((.(.((((((......(....-..).(((((((.((((..(.((......)).)..)))).))))))).)))))).).)))..))))))). ( -30.30) >DroSec_CAF1 64704 99 - 1 CUGCGGUACCCGCACUUCGAUA-----------AUGGCAAUGUUCCUAGACUCGGAAGAGUCUUCAGGUCGCCAAUGUGGGAGGGU----------UCUACCGGAUCAUAAGUUCGUUCU .(((((...)))))((((.(((-----------.((((......(((((((((....))))))..)))..)))).))).))))(((----------((....)))))............. ( -34.80) >DroSim_CAF1 43742 99 - 1 CUGCGGUACCCGCACUUCGAUA-----------AUGGUAAUGUUCCUAGACUCGGAAGAGUCUUCAGGUCGCCACUGUGGGAGGGC----------UCUACCGGAUCAUAAGUUCGUUCU ...(((((...((.((((.(((-----------.((((......(((((((((....))))))..)))..)))).))).)))).))----------..)))))................. ( -33.30) >consensus CUGCGGUACCCGCACUUCGAUA___________AUGGUAAUGUUCCUAGACUCGGAAGAGUCUUCAGGUCGCCAAUGUGGGAGGGC__________UCUACCGGAUCAUAAGUUCGUUCU .(((((...)))))((((.(((............((((.((.(....((((((....))))))..).)).)))).))).))))..................(((((.....))))).... (-23.35 = -22.25 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:36 2006